GitLab

bugfix: substituting --password for --pass to pacify mysql 5.5.34+ that no longer recognizes options by their prefix

drop fetch_all_by_from_analysis_id_and_branch_code() method and rely on AUTOLOADed BaseAdaptor's methods instead

If greedy disoriented Workers overshoot analysis_capacity|hive_capacity, make sure they respecialize after the first batch

Individual Worker's specialization is now routed through Scheduler's main subroutine, to enforce more checks

schema_change: detect and register RELOCATED events that used to mess up things on LSF 9.0 ("job rescheduled" in LSF parlance)

be more careful with fetch_overdue_workers (Use 5sec threshold to avoid checking recently active Workers. Do not use it at all when performing -all_dead.)

bugfix:  last_check_in should only be updated by register_worker_death if the Worker is burying itself

cosmetic: added (commented out) warning messages for every external system() call that LSF module runs - simplifies debugging a lot

ResourceDescription expanded to include both submission_cmd_args and worker_cmd_args. Both args can be specified in a PipeConfig file.

(1) do not change SEMAPHORED jobs to READY and (2) support more flexibility in choosing which statuses to reset

param_required() now automatically sets transient_error(0) before dying, to avoid unnecessary retries (thanks, Matthieu!)

pipeline_name is now automatically computed from ClassName; simplified workshop's example files and slides