GitLab

drop fetch_all_by_from_analysis_id_and_branch_code() method and rely on AUTOLOADed BaseAdaptor's methods instead

(1) do not change SEMAPHORED jobs to READY and (2) support more flexibility in choosing which statuses to reset

bugfix: ENSCOMPARASW-132. When all dependent jobs (>1) fail to be created due to unique constraint, they now correctly update status to READY

bugfix: reset the tried jobs to retry_count=1 and untried ones to retry_count=0 when doing a bulk reset

bugfix: make sure longer input_id hashes are correctly fetched from analysis_data table in "param stack" mode

"parameter stack" implementation using two extra fields in job table. Accu content intended for any job_id has preference over Input_id content for the same job.

Bugfixes to pacify pgsql: changed a non-functional "HAVING" into a nested SELECT, and changed unsupported SUM() into COUNT(CASE … )

changed the interface of balance_semaphores() : pass in $filter_analysis_id instead of $filter_analysis

Has one known limitation (always INSERTs instead of INSERT_IGNORE and REPLACE) and may contain other bugs.

added a new protected_prepare_execute() method to avoid deadlocks and used it twice in AnalysisJobAdaptor, to fix Stephen's deadlocks

bugfix: if re-running a job that creates a semaphored group, we no longer die (thanks Miguel for reporting)

feature: jobless workers will now leave module compilation errors in the job_message table (thanks, Kathryn!)

merge reset_and_grab into one subroutine; pre-increment dependent semaphore if re-running a DONE job; use -force flag for force-running an individual job

moved special-job-reset and special-job-reclaim into the same call, removed the unnecessary fetch in between

extend the param_init() of the garbage-collected jobs to include analysis->parameters() for template substitution (still limited!)