Commits · 9390d6824e02c2d21dd07e974ce5b7668b879e81 · ensembl-gh-mirror / ensembl-hive · GitLab

This project is mirrored from https://:*****@github.com/Ensembl/ensembl-hive.git. Pull mirroring updated Feb 09, 2023.

21 May, 2015 3 commits
- bugfix: round down the potentially non-integer hive_capacity-related limit · 9390d682
  Leo Gordon authored May 21, 2015
  
  9390d682
- bugfix: switching to using the newly created find_all_by_pattern() and... · 4da5806f
  Leo Gordon authored May 21, 2015
```
bugfix: switching to using the newly created find_all_by_pattern() and collections in Worker to fix the -job_id bug
```
  4da5806f
- find_all_by_pattern() is now supported on the collection level · 4dd351f0
  Leo Gordon authored May 21, 2015
  
  4dd351f0
20 May, 2015 1 commit
- moved mysql_use_result=>1 to the $sth_attribs hash · fa49be74
  Leo Gordon authored May 20, 2015
  
  fa49be74
19 May, 2015 2 commits
- allow capturing dataflow from a standaloneJob into a semaphored group · 7092520e
  Leo Gordon authored May 19, 2015
  
  7092520e
- Dataflow rules are stored in the Analysis, not the Job · f757c786
  Matthieu Muffato authored May 21, 2014
  
  f757c786
18 May, 2015 3 commits
- bugfix: make sure dataflown jobs are stored even in standalone mode · c07e4b5a
  Leo Gordon authored May 18, 2015
  
  c07e4b5a
- generalized load_parameters() moved into AnalysisJob · 179ee1e4
  Leo Gordon authored May 18, 2015
  
  179ee1e4
- bugfix [to 97e17d94 ] : removed the leading zero from param_init call in gc_dataflow · 241440c2
  Leo Gordon authored May 15, 2015
  
  241440c2
15 May, 2015 2 commits
- The $a syntax in #expr() has long gone, Should use #a# instead · 98d93ceb
  Matthieu Muffato authored May 15, 2015
  
  98d93ceb
- Deprecate --append in db_cmd.pl · 596723eb
  Matthieu Muffato authored May 15, 2015
  
  596723eb
14 May, 2015 1 commit
- deprecated and removed support for strict_hash_format() method in Runnables · 97e17d94
  Leo Gordon authored May 14, 2015
  
  97e17d94
13 May, 2015 1 commit
- We don't use $SKIP_TESTS in ensembl-hive · d1709ca2
  Matthieu Muffato authored May 13, 2015
  
  d1709ca2
12 May, 2015 1 commit
- revised checklist · b0dd0951
  Leo Gordon authored May 12, 2015
  
  b0dd0951
08 May, 2015 3 commits
- bugfix [to ENSCOMPARASW-191 ] : revive the ability to create a job from (analysis_id, input_id) pair · 9d7e7dd3
  Leo Gordon authored May 08, 2015
  
  9d7e7dd3
- bugfix [to ENSCOMPARASW-191 ] : revive the ability to create a job from (analysis_id, input_id) pair · 04164599
  Leo Gordon authored May 08, 2015
  
  04164599
- bugfix [to ENSCOMPARASW-191 ] : revive the ability to create a job from (analysis_id, input_id) pair · 4594078c
  Leo Gordon authored May 08, 2015
  
  4594078c
07 May, 2015 17 commits
- only show the extra details about claiming in log_message table when -debug is on · b35d4efe
  Leo Gordon authored May 07, 2015
  
  b35d4efe
- new formula for estimating num_required_workers · b1b160c3
  Leo Gordon authored Apr 01, 2015
  
  b1b160c3
- pre-load Analyses/AnalysesStats objects compatible with the Worker for faster access · 091655ee
  Leo Gordon authored Mar 31, 2015
  
  091655ee
- a prototype tail-trimming formula (only works for analyses where hive_capacity is defined) · 6a73eb1e
  Leo Gordon authored Mar 31, 2015
  
  6a73eb1e
- cosmetic: fixed a remark · 29ba7eac
  Leo Gordon authored Mar 31, 2015
  
  29ba7eac
- an ad-hoc attempt to pull up the number of required workers · c45038ce
  Leo Gordon authored Mar 26, 2015
  
  c45038ce
- account for the remaining_job_count when computing AS::get_or_estimate_batch_size · 8f812a66
  Leo Gordon authored Mar 25, 2015
  
  8f812a66
- bugfix: cache the AS object during the batch instead of fetching for every job · a28a4413
  Leo Gordon authored Mar 25, 2015
  
  a28a4413
- bugfix: do not claim if there are no jobs · 3a3fe443
  Leo Gordon authored Mar 25, 2015
  
  3a3fe443
- bugfix: make sure special_batch workers do not unclaim · 768f257a
  Leo Gordon authored Mar 25, 2015
  
  768f257a
- some TT-related debug messages sent to log_message table · 29c169fd
  Leo Gordon authored Mar 25, 2015
  
  29c169fd
- Workers attempt to unclaim the rest of the batch to share the load (tail trimming) · 6cbfc423
  Leo Gordon authored Mar 23, 2015
  
  6cbfc423
- Trim the long tails of heavily-batched analyses (and plans of how to implement UNCLAIMing) · 90b21de6
  Leo Gordon authored Mar 05, 2015
  
  90b21de6
- back-ported the change -- merged for consistency · 80b88eeb
  Leo Gordon authored May 07, 2015
  
  80b88eeb
- back-ported from version/2.3 the bugfix [to ENSCOMPARASW-247] : find-and-match... · 146e465f
  Leo Gordon authored May 07, 2015
```
back-ported from version/2.3 the bugfix [to ENSCOMPARASW-247] : find-and-match the funnel job when storing it failed
```
  146e465f
- back-ported from version/2.3 the bugfix [to ENSCOMPARASW-247] : find-and-match... · 0fc7fccd
  Leo Gordon authored May 05, 2015
```
back-ported from version/2.3 the bugfix [to ENSCOMPARASW-247] : find-and-match the funnel job when storing it failed
```
  0fc7fccd
- back-porting the LMA::store_hive_message method · 1454c8ed
  Leo Gordon authored May 07, 2015
  
  1454c8ed
05 May, 2015 1 commit
- bugfix [to ENSCOMPARASW-247 ] : find-and-match the funnel job when storing it failed · 6625401d
  Leo Gordon authored May 05, 2015
  
  6625401d
28 Apr, 2015 2 commits
- bugfix to [to bee183d1] : ignore a possible collision with another beekeeper... · 4457d01e
  Leo Gordon authored Apr 28, 2015
```
bugfix to [to bee183d1] : ignore a possible collision with another beekeeper updating worker_resource_usage
```
  4457d01e
- extended LMA::store_worker_message to work with worker_id · 68943d44
  Leo Gordon authored Apr 28, 2015
  
  68943d44
27 Apr, 2015 3 commits
- schema_change: added a view to count live roles by meadow_user, meadow_type,... · b5913796
  Leo Gordon authored Apr 27, 2015
```
schema_change: added a view to count live roles by meadow_user, meadow_type, resource_class and analysis
```
  b5913796
- schema_fix: back-ported the change -- merged just for consistency · 556d6367
  Leo Gordon authored Apr 27, 2015
  
  556d6367
- schema_fix: back-ported the change from version/2.3:procedures.*sql* to know the analysis from role · 6ccd7cc9
  Leo Gordon authored Apr 27, 2015
  
  6ccd7cc9