This project is mirrored from https://:*****@github.com/Ensembl/ensembl-hive.git.
Pull mirroring updated .
- 06 Jul, 2016 8 commits
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Matthieu Muffato authored
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Brandon Walts authored
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Brandon Walts authored
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Brandon Walts authored
hy this merge is necessary,
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Brandon Walts authored
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Brandon Walts authored
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Brandon Walts authored
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Brandon Walts authored
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- 05 Jul, 2016 1 commit
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Matthieu Muffato authored
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- 29 Jun, 2016 1 commit
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Brandon Walts authored
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- 28 Jun, 2016 11 commits
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Matthieu Muffato authored
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Matthieu Muffato authored
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Matthieu Muffato authored
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Matthieu Muffato authored
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Brandon Walts authored
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Brandon Walts authored
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Brandon Walts authored
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Leo Gordon authored
New approach to protecting DBI handles from a timed-out disconnection of the server. It extends to methods like $dbc->do() or $dbc->select_*
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Leo Gordon authored
New approach to protecting DBI::st(atement handlers) from a timed-out disconnection of the server. It extends to all methods that are prepare()d and then execute()d.
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Matthieu Muffato authored
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Matthieu Muffato authored
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- 27 Jun, 2016 8 commits
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Matthieu Muffato authored
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Matthieu Muffato authored
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Matthieu Muffato authored
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Matthieu Muffato authored
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Matthieu Muffato authored
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Matthieu Muffato authored
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Matthieu Muffato authored
The "topup" mode was not error-safe because it the first run failed, the second would almost certainly fail because of duplicated rows. The solution is to add the --insertignore flag and to tweak the post-copy checks. Even though the mysqldump options are now the same in "topup" and "insertignore" modes, "topup" still means that all the source rows must be in the target table (even though some could already be present when the copy starts). "insertignore" means that we know that some rows could be missing.
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Matthieu Muffato authored
Don't need to consider the EHIVE_DROP_DB_TEST_URL variable, since we have a get_test_urls() in Utils::Test
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- 22 Jun, 2016 3 commits
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Brandon Walts authored
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Brandon Walts authored
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Brandon Walts authored
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- 20 Jun, 2016 8 commits
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Matthieu Muffato authored
* version/2.4: bugfix: "return_codes_2_branches" may be missing, in which case skip this part
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Matthieu Muffato authored
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Matthieu Muffato authored
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Matthieu Muffato authored
Don't display DONE and EMPTY analyses in beekeeper output but still mentions how many of them there are. This does not apply to the debug mode
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Matthieu Muffato authored
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Matthieu Muffato authored
* version/2.4: changes to allow no trailing slash in database-instance URLs (updated not to assume dbname is always defined) Explain why the module could not be loaded Cache the total hive load in HivePipeline
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Leo Gordon authored
changes to allow no trailing slash in database-instance URLs (updated not to assume dbname is always defined)
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Matthieu Muffato authored
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