This project is mirrored from https://:*****@github.com/Ensembl/ensembl-hive.git. Pull mirroring updated .
  1. 06 Jul, 2016 1 commit
  2. 29 Jan, 2016 1 commit
  3. 24 Jan, 2014 2 commits
  4. 09 Dec, 2013 1 commit
  5. 11 Jul, 2013 1 commit
  6. 02 Jul, 2013 1 commit
  7. 29 Apr, 2013 1 commit
  8. 31 Oct, 2012 1 commit
  9. 13 Oct, 2012 1 commit
  10. 09 May, 2011 1 commit
  11. 14 Apr, 2011 1 commit
  12. 13 Apr, 2011 1 commit
  13. 14 Jul, 2010 2 commits
  14. 18 Jun, 2010 1 commit
  15. 15 Jun, 2010 1 commit
  16. 13 Jun, 2010 2 commits
  17. 19 Mar, 2010 1 commit
  18. 03 Dec, 2009 1 commit
  19. 16 Aug, 2005 1 commit
    • Jessica Severin's avatar
      added system for job-level blocking/unblocking. This is a very fine grain · faead1e0
      Jessica Severin authored
      control structure where a process/program has been made aware of the job(s)
      they are responsible for controlling.  This is facilited via a job url:
         mysql://ia64e:3306/jessica_compara32b_tree/analysis_job?dbID=6065355
      AnalysisJobAdptor::CreateNewJob now returns this url on job creation.
      When a job is datflowed, an array of these urls is returned (one for each rule).
      Jobs can now be dataflowed from a Process subclass with blocking enabled.
      A job can be fetched directly with one of these URLs.
      A commandline utility ehive_unblock.pl has been added to unblock a url job.
      To unblock a job do:
         Bio::EnsEMBL::Hive::URLFactory->fetch($url)->update_status('READY');
      This is primarily useful in asynchronous split process/parsing situations.
      faead1e0
  20. 09 Aug, 2005 1 commit
  21. 13 Jun, 2005 1 commit
  22. 18 Apr, 2005 1 commit
    • Jessica Severin's avatar
      made more Registry friendly by setting -species to be the $dbname · d9eaabe4
      Jessica Severin authored
      thus allowing one to do hybrid URL/Registry code like...
        if($url) {
          $dbc = Bio::EnsEMBL::Hive::URLFactory->fetch($url, 'compara')->dbc;
          $dbname = $dbc->dbname();
        }
        else { $dbc = Bio::EnsEMBL::Registry->get_DBAdaptor($dbname,'compara')->dbc; }
        $fa = Bio::EnsEMBL::Registry->get_adaptor($dbname,'compara','Family');
      d9eaabe4
  23. 22 Mar, 2005 1 commit
  24. 03 Aug, 2004 2 commits
  25. 02 Aug, 2004 3 commits
  26. 17 Jun, 2004 1 commit
  27. 14 Jun, 2004 2 commits
  28. 11 Jun, 2004 1 commit
  29. 07 Jun, 2004 1 commit
    • Jessica Severin's avatar
      complete switch over to new DataflowRule design. Dataflow rules use · e45d4761
      Jessica Severin authored
      URL's to specify analysis objects from mysql databases distributed
      across a network.  AnalysisJobAdaptor was switched to create jobs with
      a cless method that gets the db connection from the analysis object that
      is passed.  Thus the system now exists in a distributed state.
      The dataflow rule also implements branching via the branch_code.
      SimpleRule will be deprecated.
      e45d4761