This project is mirrored from https://:*****@github.com/Ensembl/ensembl-hive.git. Pull mirroring updated .
  1. 10 Feb, 2015 5 commits
  2. 09 Feb, 2015 1 commit
    • Matthieu Muffato's avatar
      warning() is in Process, not AnalysisJob · 786041cb
      Matthieu Muffato authored
      The error was actually hidden by the big eval{} in runworker, but with some debugging, one would have seen:
      
      Storable::AUTOLOAD : attempting to run 'Bio::EnsEMBL::Hive::AnalysisJob::warning' (Bio::EnsEMBL::Hive::AnalysisJob=HASH(0x1ce1810), TEST, 1)
      Storable::AUTOLOAD : could not parse 'warning' at /nfs/users/nfs_m/mm14/workspace/src/hive/master/modules/Bio/EnsEMBL/Hive/Storable.pm line 133.
              Bio::EnsEMBL::Hive::Storable::AUTOLOAD('Bio::EnsEMBL::Hive::AnalysisJob=HASH(0x1ce1810)', 'TEST', 1) called at /nfs/users/nfs_m/mm14/workspace/src/hive/master/modules/Bio/EnsEMBL/Hive/Worker.pm line 705
              Bio::EnsEMBL::Hive::Worker::run_one_batch('Bio::EnsEMBL::Hive::Worker=HASH(0x1c04078)', 'ARRAY(0x1cdced0)') called at /nfs/users/nfs_m/mm14/workspace/src/hive/master/modules/Bio/EnsEMBL/Hive/Worker.pm line 484
              Bio::EnsEMBL::Hive::Worker::run('Bio::EnsEMBL::Hive::Worker=HASH(0x1c04078)', 'HASH(0x1cbf510)') called at /nfs/users/nfs_m/mm14/workspace/src/hive/master/modules/Bio/EnsEMBL/Hive/Scripts/RunWorker.pm line 76
              Bio::EnsEMBL::Hive::Scripts::RunWorker::runWorker('Bio::EnsEMBL::Hive::DBSQL::DBAdaptor=HASH(0x119d618)', 'HASH(0x1af27b0)', 'HASH(0x1af2888)', 'HASH(0x1af2918)') called at /nfs/users/nfs_m/mm14/workspace/src/hive/master/scripts/runWorker.pl line 135
              main::main() called at /nfs/users/nfs_m/mm14/workspace/src/hive/master/scripts/runWorker.pl line 23
      786041cb
  3. 05 Feb, 2015 2 commits
  4. 04 Feb, 2015 6 commits
  5. 02 Feb, 2015 5 commits
  6. 31 Jan, 2015 1 commit
    • Matthieu Muffato's avatar
      Merge branch 'feature/tests_ci' · 9bdbabbf
      Matthieu Muffato authored
      Test-suite for many eHive modules (thanks kiwiroy !)
      New Hive::Utils::Test module that allows to test:
       - a runnable in standalone job mode
       - the initialisation of a pipeline
       - running a worker
      
      As part of this process, several scripts are now mainly defined in modules
      under Scripts/
      9bdbabbf
  7. 29 Jan, 2015 14 commits
  8. 28 Jan, 2015 1 commit
  9. 27 Jan, 2015 5 commits