GitLab

schema_change: detect and register RELOCATED events that used to mess up things on LSF 9.0 ("job rescheduled" in LSF parlance)

be more careful with fetch_overdue_workers (Use 5sec threshold to avoid checking recently active Workers. Do not use it at all when performing -all_dead.)

bugfix:  last_check_in should only be updated by register_worker_death if the Worker is burying itself

cosmetic: added (commented out) warning messages for every external system() call that LSF module runs - simplifies debugging a lot

ResourceDescription expanded to include both submission_cmd_args and worker_cmd_args. Both args can be specified in a PipeConfig file.

(1) do not change SEMAPHORED jobs to READY and (2) support more flexibility in choosing which statuses to reset

param_required() now automatically sets transient_error(0) before dying, to avoid unnecessary retries (thanks, Matthieu!)

pipeline_name is now automatically computed from ClassName; simplified workshop's example files and slides

bugfix: ENSCOMPARASW-132. When all dependent jobs (>1) fail to be created due to unique constraint, they now correctly update status to READY

bugfix: reset the tried jobs to retry_count=1 and untried ones to retry_count=0 when doing a bulk reset

methods dbconn_2_mysql(), dbconn_2_pgsql(), db_connect_command(), db_execute_command() are DEPRECATED - use db_cmd.pl instead

added support for -pipeline_url as an input parameter (no need to supply hive_driver or password in this case)

now performing deep-stack substitution for whatever is dataflown into tables (rather than just dataflowing the output_id)

bugfix: substituting the accu signature on demand from the very depths of emitting job's param_stack