GitLab

All Hive scripts now detect $::hive_root_dir and use it for setting the @INC so manual setting of PERL5LIB is only needed if using API directly

make sure beekeeper.pl runs runWorker.pl from its own scripts directory (ignore the one in the path)

Copied the @-tag annotation from tables.sql to tables.sqlite. Unlike the original mysql version, the SQLite version gives no warnings when processed by sql2html.pl

added a new protected_prepare_execute() method to avoid deadlocks and used it twice in AnalysisJobAdaptor, to fix Stephen's deadlocks

bugfix: do not crash on encountering accumulated dataflow (just ignore it for the moment); work correctly in DisplayStretched mode

bugfix: check before storing rc (may be necessary in -analysis_topup mode) and warn about consequences of redefining it.

API extension: store() now also returns how many actual store operations (as opposed to fetching of already stored ones) it has performed

Back to num_required_workers' meaning "how many extra workers we need to add to this analysis"; fixing a scheduling bug/oversensitivity to manual change of batch_size

free 'Start' from dealing with 'a_multiplier' by using an input_id_template in PipeConfig instead; renamed 'Start' to 'DigitFactory' to reflect that

A 3-analysis pipeline with almost exclusive use of #substitution#; mysql_conn() and mysql_dbname() modified to transform urls as well

A cleaner example of a two-analysis pipelines with better demonstration of #substitution# and only implicit $self->o() references

Protect generate_graph.pl in table-drawing mode from printing too many rows (by setting a limit in JSON config)

Protect generate_graph.pl in job-drawing mode from printing too many jobs (by setting a limit in JSON config)