Commits · a8d596d65e5c97d8303bd5587ff95623536dd0ac · ensembl-gh-mirror / ensembl-hive

This project is mirrored from https://:*****@github.com/Ensembl/ensembl-hive.git. Pull mirroring updated Jan 29, 2023.

11 May, 2012 1 commit
- a new class to represent a collection of available Meadows · a8d596d6
  Leo Gordon authored May 11, 2012
  
  a8d596d6
10 May, 2012 1 commit
- removed obsolete -maximise_concurrency and -batch_size options from both scripts · 18dfceb0
  Leo Gordon authored May 10, 2012
  
  18dfceb0
09 May, 2012 1 commit

bugfix+feature: -local_cpus renamed into -total_workers_max and so made... · 346613a2

Leo Gordon authored May 09, 2012

bugfix+feature: -local_cpus renamed into -total_workers_max and so made available for any meadow (not just LOCAL). Plus some renames

346613a2

08 May, 2012 3 commits
- make beekeeper more Meadow-agnostic and allow it to automatically find... · 337fee35
  Leo Gordon authored May 08, 2012
```
make beekeeper more Meadow-agnostic and allow it to automatically find alternative Meadow modules in the INC list
```
  337fee35
- check the availability of this Meadow on the given machine · 364d341e
  Leo Gordon authored May 08, 2012
  
  364d341e
- new function for finding all modules in a "directory" across the whole INC list · ad03106b
  Leo Gordon authored May 08, 2012
  
  ad03106b
02 May, 2012 4 commits
- removed create_rule() method that is no longer used · da4b0bb0
  Leo Gordon authored May 02, 2012
  
  da4b0bb0
- explicit new->store rules; retiring create_rule(); switch to using toString() · 2929ae1a
  Leo Gordon authored May 02, 2012
  
  2929ae1a
- switch to using uniform toString() diagnostic method · 82b427c0
  Leo Gordon authored May 02, 2012
  
  82b427c0
- move input_id_template stringification into DFR class · 2416bd72
  Leo Gordon authored May 02, 2012
  
  2416bd72
01 May, 2012 5 commits
- remove_by_condition_analysis_url() is no longer used by Compara, so has been removed · 0cbb4afd
  Leo Gordon authored May 01, 2012
  
  0cbb4afd
- a Process does not need a reference to the Queen · 8811e268
  Leo Gordon authored May 01, 2012
  
  8811e268
- analyze_tables() does not seem to be used anymore · d622eaf3
  Leo Gordon authored May 01, 2012
  
  d622eaf3
- bugfix: make sure runtime_msec is stored even when a job dies · e47201c5
  Leo Gordon authored May 01, 2012
  
  e47201c5
- no longer used · 04ad0fab
  Leo Gordon authored May 01, 2012
  
  04ad0fab
23 Apr, 2012 1 commit
- code for showing semaphores as nested boxes · 7e45b86c
  Leo Gordon authored Apr 23, 2012
  
  7e45b86c
16 Apr, 2012 1 commit
- changes during rel.67 · 9ddf14ed
  Leo Gordon authored Apr 16, 2012
  
  9ddf14ed
27 Mar, 2012 1 commit
- a typo in comments · 076af646
  Leo Gordon authored Mar 27, 2012
  
  076af646
26 Mar, 2012 2 commits
- schema_version=67 · a81c8863
  Matthieu Muffato authored Mar 26, 2012
  
  a81c8863
- schema_version=67 · 0663c243
  Matthieu Muffato authored Mar 26, 2012
  
  0663c243
20 Mar, 2012 1 commit
- code optimization suggested by Matthieu · a1d37d9e
  Leo Gordon authored Mar 20, 2012
  
  a1d37d9e
19 Mar, 2012 1 commit
- weaken the link back from the object back to the adaptor · 4da57a10
  Leo Gordon authored Mar 19, 2012
  
  4da57a10
07 Mar, 2012 2 commits
- added support for reading compressed files · 595d9e36
  Leo Gordon authored Mar 07, 2012
  
  595d9e36
- a Bio::Seq example factory Runnable and a matching PipeConfig file · 5cb1771d
  Leo Gordon authored Mar 07, 2012
  
  5cb1771d
01 Mar, 2012 2 commits
- improved STDOUT/STDERR redirection into files; removal of job logs on success · f0edaecf
  Leo Gordon authored Mar 01, 2012
  
  f0edaecf
- a special module to deal with stacks of filehandle redirection · 2edfa351
  Leo Gordon authored Mar 01, 2012
  
  2edfa351
24 Feb, 2012 1 commit
- pass debug level parameter from beekeeper.pl to runWorker.pl · 35b2e6ec
  Leo Gordon authored Feb 24, 2012
  
  35b2e6ec
23 Feb, 2012 1 commit
- bugfix: only store values that have been set - avoid overriding defaults · 48f302a0
  Leo Gordon authored Feb 23, 2012
  
  48f302a0
20 Feb, 2012 1 commit
- attempt to display each funnel below its fan · e28bbc00
  Leo Gordon authored Feb 20, 2012
  
  e28bbc00
16 Feb, 2012 1 commit
- diagram tool no longer generates unnecessarily broken edges · 54252abc
  Leo Gordon authored Feb 16, 2012
  
  54252abc
15 Feb, 2012 2 commits
- restrict to DEAD workers only · ac91783e
  Leo Gordon authored Feb 15, 2012
  
  ac91783e
- documentation and better user interface (dumping and undumping supported) · 02313941
  Leo Gordon authored Feb 15, 2012
  
  02313941
14 Feb, 2012 3 commits
- turned mem and swap into numeric columns; careful with units! · 44f04b93
  Leo Gordon authored Feb 14, 2012
  
  44f04b93
- post-mortem loader of worker memory usage information from the LSF · d385ed7c
  Leo Gordon authored Feb 14, 2012
  
  d385ed7c
- Pipeline parameters cannot take undefined values. Warn and force into 0 · 579e38a1
  Leo Gordon authored Feb 14, 2012
  
  579e38a1
10 Feb, 2012 1 commit
- added changelog for rel.66 · 36a2e1a4
  Leo Gordon authored Feb 10, 2012
  
  36a2e1a4
31 Jan, 2012 1 commit
- an optimization: do not touch analysis_stats when job.status or job.analysis is not changing · ac793670
  Leo Gordon authored Jan 31, 2012
  
  ac793670
20 Jan, 2012 1 commit
- changes for rel.66 · 759a38f1
  Leo Gordon authored Jan 20, 2012
  
  759a38f1
08 Dec, 2011 2 commits
- checked in by mistake last time; took back the changes now · 153d7ccd
  Leo Gordon authored Dec 08, 2011
  
  153d7ccd
- Removed maximise_concurrency and added analysis_stats.priority to guide the... · 26a2ced3
  Leo Gordon authored Dec 08, 2011
```
Removed maximise_concurrency and added analysis_stats.priority to guide the scheduler; improved scheduler and LSF meadow
```
  26a2ced3