Commits · b04d774b82761558483702884c7460d59a7e53b4 · ensembl-gh-mirror / ensembl-hive

This project is mirrored from https://:*****@github.com/Ensembl/ensembl-hive.git. Pull mirroring updated Feb 03, 2023.

15 Mar, 2016 7 commits
- moved list_all_hive_tables() and list_all_hive_views() into HivePipeline; they remain getters-only · b04d774b
  Leo Gordon authored Mar 15, 2016
  
  b04d774b
- moved hive_use_triggers() into HivePipeline; it is still only a getter · 67aa0d80
  Leo Gordon authored Mar 15, 2016
  
  67aa0d80
- moved hive_auto_rebalance_semaphores() into HivePipeline and made it settable · 31b44c40
  Leo Gordon authored Mar 15, 2016
  
  31b44c40
- a new test for Utils::split_for_bash() function · d1ba0861
  Leo Gordon authored Mar 15, 2016
  
  d1ba0861
- bugfix: there can be only 1 resulting job on the funnel · ffe2962e
  Matthieu Muffato authored Mar 15, 2016
```
All the DataFlowTargets should be counted when checking that there is a
single job on the funnel. The previous code was counting the number of
successful rules, we now count their targets as well.
```
  ffe2962e
- I guess python needs __init__.py · 75a8b3f4
  Matthieu Muffato authored Mar 15, 2016
  
  75a8b3f4
- Moved the Python examples to the eHive.examples package · 54893c33
  Matthieu Muffato authored Mar 15, 2016
  
  54893c33
14 Mar, 2016 4 commits
- bugfix: make sure we do not insert 0000-00-00 on topping up a running database... · d8246211
  Leo Gordon authored Mar 14, 2016
```
bugfix: make sure we do not insert 0000-00-00 on topping up a running database (a bug for strict MySQL 5.6)
```
  d8246211
- bugfix: make sure we do not insert 0000-00-00 on topping up a running database... · e919deaa
  Leo Gordon authored Mar 14, 2016
```
bugfix: make sure we do not insert 0000-00-00 on topping up a running database (a bug for strict MySQL 5.6)
```
  e919deaa
- bugfix: make sure we do not insert 0000-00-00 on topping up a running database... · 9072b34f
  Leo Gordon authored Mar 14, 2016
```
bugfix: make sure we do not insert 0000-00-00 on topping up a running database (a bug for strict MySQL 5.6)
```
  9072b34f
- bugfix: make sure we do not insert 0000-00-00 on topping up a running database... · 29434b3e
  Leo Gordon authored Mar 14, 2016
```
bugfix: make sure we do not insert 0000-00-00 on topping up a running database (a bug for strict MySQL 5.6)
```
  29434b3e
11 Mar, 2016 4 commits
- let the -tweak system set attributes of the HivePipeline, if it ->can() · bf5c438d
  Leo Gordon authored Mar 11, 2016
  
  bf5c438d
- make sure the Analysis->attrib_name exists and can be read/set · 3e2990e9
  Leo Gordon authored Mar 11, 2016
  
  3e2990e9
- pod change: added description of -nosqlvc command line option · 7b172249
  Leo Gordon authored Mar 11, 2016
  
  7b172249
- added support for -tweak global.hive_meta_attribute=value · c89c4371
  Leo Gordon authored Mar 11, 2016
  
  c89c4371
10 Mar, 2016 6 commits

bugfix: make sure the outer pair of quotes is removed as per bash rules (using... · 45827641

Leo Gordon authored Mar 10, 2016

bugfix: make sure the outer pair of quotes is removed as per bash rules (using a new function) -- thanks to Harpreet for reporting

45827641

bugfix: make sure the outer pair of quotes is removed as per bash rules (using... · 9c940144

Leo Gordon authored Mar 10, 2016

bugfix: make sure the outer pair of quotes is removed as per bash rules (using a new function) -- thanks to Harpreet for reporting

9c940144

bugfix: make sure the outer pair of quotes is removed as per bash rules (using... · 47421f9c

Leo Gordon authored Mar 10, 2016

bugfix: make sure the outer pair of quotes is removed as per bash rules (using a new function) -- thanks to Harpreet for reporting

47421f9c

bugfix: make sure the outer pair of quotes is removed as per bash rules (using... · edb3366c

Leo Gordon authored Mar 10, 2016

bugfix: make sure the outer pair of quotes is removed as per bash rules (using a new function) -- thanks to Harpreet for reporting

edb3366c

bugfix: make sure the outer pair of quotes is removed as per bash rules (using... · 93379a0f

Leo Gordon authored Mar 10, 2016

bugfix: make sure the outer pair of quotes is removed as per bash rules (using a new function) -- thanks to Harpreet for reporting

93379a0f

bugfix: make sure the outer pair of quotes is removed as per bash rules (using... · 9d7edf37

Leo Gordon authored Mar 10, 2016

bugfix: make sure the outer pair of quotes is removed as per bash rules (using a new function) -- thanks to Harpreet for reporting

9d7edf37

09 Mar, 2016 1 commit
- the printed output of apply_tweaks() is now based on restricted vocabulary · 38e135d7
  Leo Gordon authored Mar 09, 2016
  
  38e135d7
08 Mar, 2016 6 commits
- bugfix: hide the URL password in LSF output (again) · cbbde5a1
  Leo Gordon authored Mar 08, 2016
  
  cbbde5a1
- bugfix: hide the URL password in LSF output (again) · 107f7380
  Leo Gordon authored Mar 08, 2016
  
  107f7380
- bugfix: hide the URL password in LSF output (again) · e48a0a71
  Leo Gordon authored Mar 08, 2016
  
  e48a0a71
- bugfix: hide the URL password in LSF output (again) · a101de19
  Leo Gordon authored Mar 08, 2016
  
  a101de19
- bugfix: hide the URL password in LSF output (again) · 008a5f65
  Leo Gordon authored Mar 08, 2016
  
  008a5f65
- bugfix: hide the URL password in LSF output (again) · c863467f
  Leo Gordon authored Mar 08, 2016
  
  c863467f
04 Mar, 2016 6 commits
- Use the new -tweak interface to set "take_time" to 0 · 905c8186
  Matthieu Muffato authored Mar 04, 2016
  
  905c8186
- Removed a runtime warning (nothing between the two commas) · 5cca7439
  Matthieu Muffato authored Mar 04, 2016
  
  5cca7439
- Allow unit-tests to define tweaks for their pipeline too · b68182cd
  Matthieu Muffato authored Mar 04, 2016
  
  b68182cd
- a new script to perform tweaks on an existing pipeline database · d10d7012
  Leo Gordon authored Mar 04, 2016
  
  d10d7012
- making sure undefs and complex tweak values are passed around correctly · b2e32358
  Leo Gordon authored Mar 04, 2016
  
  b2e32358
- extend the "tweak language" with the flow_into pseudo-attribute for adding dataflow rules · 6f57e8e0
  Leo Gordon authored Mar 04, 2016
  
  6f57e8e0
02 Mar, 2016 6 commits
- Since there is no UNIQUE KEY in analysis_data, we need to detect redundant entries ourselves · 9076d03d
  Matthieu Muffato authored Feb 27, 2016
  
  9076d03d
- Added a "smarter" version of LongMult with further usage of WHEN, INPUT_PLUS and "#expr" · 9ef2d52e
  Matthieu Muffato authored Nov 10, 2015
  
  9ef2d52e
- Check that the db_handle is still valid before using it · 9cabcb3c
  Matthieu Muffato authored Mar 02, 2016
  
  9cabcb3c
- Integration to Slack (Runnable + beekeeper) · a8811766
  Matthieu Muffato authored Jan 07, 2016
  
  a8811766
- Check that the table has the same schema on both sides · 8265f2eb
  Matthieu Muffato authored Feb 29, 2016
  
  8265f2eb
- "table" is a parameter that the user *must* define · e49dcfa2
  Matthieu Muffato authored Feb 29, 2016
  
  e49dcfa2