Commits · b4743e732da24f6b21e279a3beac0291b06f12a8 · ensembl-gh-mirror / ensembl-hive

This project is mirrored from https://:*****@github.com/Ensembl/ensembl-hive.git. Pull mirroring updated Feb 07, 2023.

25 Sep, 2012 2 commits

Dropped 'BLOCKED' job status and introduced 'SEMAPHORED' status that is... · b4743e73

Leo Gordon authored Sep 25, 2012

Dropped 'BLOCKED' job status and introduced 'SEMAPHORED' status that is maintained in sync with semaphore_counts; less confusing and more efficient (with new 3-part index)

b4743e73

record each Workers log_dir in the database; simplified the log_dir code and... · 01e034eb
Leo Gordon authored Sep 25, 2012
```
record each Workers log_dir in the database; simplified the log_dir code and renamed cmdline options accordingly
```
01e034eb

21 Sep, 2012 3 commits
- moved resource_class_id from analysis_stats and analysis_stats_monitor to analysis_base · 9e3508cc
  Leo Gordon authored Sep 21, 2012
  
  9e3508cc
- fetch_all never seems to be executed for these adaptors · 0f4b0911
  Leo Gordon authored Sep 21, 2012
  
  0f4b0911
- bugfix: better parsing of the LSF-job-name · fdbcd14a
  Leo Gordon authored Sep 21, 2012
  
  fdbcd14a
20 Sep, 2012 3 commits
- optimization: worker should not sync analyses it is not ready to run · 2952e74e
  Leo Gordon authored Sep 20, 2012
  
  2952e74e
- replaced internal rc_id by rc_name in the Meadow code and in most of the Scheduler; needs testing · a744dfb2
  Leo Gordon authored Sep 20, 2012
  
  a744dfb2
- allow JOIN to appear in the constraint and act wisely - so we do not need... · b972daaf
  Leo Gordon authored Sep 20, 2012
```
allow JOIN to appear in the constraint and act wisely - so we do not need extra complicated syntax for joining
```
  b972daaf
07 Sep, 2012 2 commits
- not ready yet to scrap the "Runnable" support · 96c477f5
  Leo Gordon authored Sep 07, 2012
  
  96c477f5
- (patch offered by Matthieu) Allow the Job to kill the Worker even on succecss · 10e3563a
  Leo Gordon authored Sep 07, 2012
  
  10e3563a
05 Sep, 2012 3 commits
- Updated the list of eHive tables · d6f28cf1
  Matthieu Muffato authored Sep 05, 2012
  
  d6f28cf1
- these methods are already defined in the parent class · 83384dd7
  Leo Gordon authored Sep 05, 2012
  
  83384dd7
- trimmed the commented-out 'use' statements · 45e984ef
  Leo Gordon authored Sep 05, 2012
  
  45e984ef
04 Sep, 2012 3 commits
- slimmed down the Extensions module a bit (valuable code already moved into Hive::Analysis) · acedf016
  Leo Gordon authored Sep 04, 2012
  
  acedf016
- substituted the overloaded legacy 'analysis' table by a slimmer 'analysis_base' · fb990f2a
  Leo Gordon authored Sep 04, 2012
  
  fb990f2a
- actually switch to using rc_name in the workers commandline · c3a7441f
  Leo Gordon authored Sep 04, 2012
  
  c3a7441f
03 Sep, 2012 4 commits
- make sure beekeeper reports the same scheduling plans both when it is actually... · dba2c9b7
  Leo Gordon authored Sep 03, 2012
```
make sure beekeeper reports the same scheduling plans both when it is actually scheduling and in "reporting" mode
```
  dba2c9b7
- adding rc_name to the lsf_report · 7a3c776d
  Leo Gordon authored Sep 03, 2012
  
  7a3c776d
- rc_name support in the beekeeper · 93c04edf
  Leo Gordon authored Sep 03, 2012
  
  93c04edf
- rc_name support in the Worker · 921f42ca
  Leo Gordon authored Sep 03, 2012
  
  921f42ca
29 Aug, 2012 1 commit
- a typo in perldoc · 2e22719c
  Leo Gordon authored Aug 29, 2012
  
  2e22719c
28 Aug, 2012 2 commits
- this diagnostic information is no longer needed · ec2ca3df
  Leo Gordon authored Aug 28, 2012
  
  ec2ca3df
- Scheduler should explain that workers are not added because of the pending ones · 3bbf5583
  Leo Gordon authored Aug 28, 2012
  
  3bbf5583
27 Aug, 2012 1 commit
- eHive tables are always included unless exclude_ehive is defined · 7261b8b4
  Matthieu Muffato authored Aug 27, 2012
  
  7261b8b4
25 Aug, 2012 2 commits
- make sure default is in the beginning of the list · f98908b0
  Leo Gordon authored Aug 25, 2012
  
  f98908b0
- Updated the eHive table list + fixed typo · b2fc07b5
  Matthieu Muffato authored Aug 25, 2012
  
  b2fc07b5
24 Aug, 2012 3 commits
- inherit Job,Worker,DFR,RC from Bio::EnsEMBL::Storable, reuse some code · c665fbfc
  Leo Gordon authored Aug 24, 2012
  
  c665fbfc
- starting the rel69... · cb325115
  Leo Gordon authored Aug 24, 2012
  
  cb325115
- bugfix: make sure there is at least a number in the query (reported by Matthieu) · 2e2e800d
  Leo Gordon authored Aug 24, 2012
  
  2e2e800d
23 Aug, 2012 2 commits
- renamed to_string into toString for uniformity · fa69f1d0
  Leo Gordon authored Aug 23, 2012
  
  fa69f1d0
- Added a "skip_dump" parameter to ease the restoration of a dump · 9a683d64
  Matthieu Muffato authored Aug 23, 2012
  
  9a683d64
17 Aug, 2012 1 commit
- trying to be more careful with references; release jobs' parameters earlier · ec736411
  Leo Gordon authored Aug 17, 2012
  
  ec736411
16 Aug, 2012 2 commits
- Can copy a database to another database · 362a170e
  Matthieu Muffato authored Aug 16, 2012
  
  362a170e
- change suggested by Matthieu to avoid crashing if the temp_directory has... · 816ff55a
  Leo Gordon authored Aug 16, 2012
```
change suggested by Matthieu to avoid crashing if the temp_directory has already been deleted by Runnable
```
  816ff55a
14 Aug, 2012 1 commit
- switch to module->new() notation everywhere, to simplify text searches · 78b7de4e
  Leo Gordon authored Aug 14, 2012
  
  78b7de4e
03 Aug, 2012 3 commits
- no longer used as individual jobs are no longer specifically blocked · 857b008f
  Leo Gordon authored Aug 03, 2012
  
  857b008f
- removed honeycomb support because it is no longer used by Compara modules · 3f02da86
  Leo Gordon authored Aug 03, 2012
  
  3f02da86
- hopefully will fix the "was not locked with LOCK TABLES" error message · 27565ba8
  Leo Gordon authored Aug 03, 2012
  
  27565ba8
02 Aug, 2012 1 commit
- new changes for the pre-rel69 version · 61452aae
  Leo Gordon authored Aug 02, 2012
  
  61452aae
01 Aug, 2012 1 commit
- removed the alternative "nowrite" spelling to simplify interface · 6fe23a89
  Leo Gordon authored Aug 01, 2012
  
  6fe23a89