This project is mirrored from https://:*****@github.com/Ensembl/ensembl-hive.git.
Pull mirroring updated .
- 12 Jun, 2018 1 commit
-
-
Brandon Walts authored
-
- 11 Jun, 2018 1 commit
-
-
Brandon Walts authored
-
- 08 Jun, 2018 3 commits
-
-
Brandon Walts authored
-
Brandon Walts authored
-
Brandon Walts authored
-
- 07 Jun, 2018 12 commits
-
-
Matthieu Muffato authored
-
Matthieu Muffato authored
-
Matthieu Muffato authored
-
Matthieu Muffato authored
In fact, it's not unitargets itself that is slow, it is `Collection::find_all_by` (called via `get_my_targets`) as collections are not indexed.
-
Matthieu Muffato authored
'source_dataflow_rule'==undef can only be matched by the targets created right before since they will either be given a real source_dataflow_rule or be forgotten below once we've identified the correct DataflowRule
-
Matthieu Muffato authored
This brings a minor performance improvement.
-
Matthieu Muffato authored
This saves us from parsing the method name again and again. This command: ``` generate_graph.pl -pipeconfig Bio::EnsEMBL::Compara::PipeConfig::EBI::Ensembl::ProteinTrees_conf -output /tmp/dummy.png -mlss_id 34 ``` now takes ~10 seconds instead of ~22 seconds by saving >3.8M calls to `parse_undescored_id_name`. To be clear the 3.8M calls still happen but they're directly routed to the new subs instead of being processed by AUTOLOAD.
-
Matthieu Muffato authored
-
Brandon Walts authored
Since we can't easily match the host name, check the permissions on *all* the hosts and tell whether there is write access to _one_ of them
-
Matthieu Muffato authored
-
Brandon Walts authored
-
Brandon Walts authored
-
- 31 May, 2018 10 commits
-
-
Matthieu Muffato authored
-
Matthieu Muffato authored
* version/2.4: Copyright update Copyright update Copyright update Copyright update Copyright update Copyright update bugfix: the / is a remnant of the previous regex Show the stack trace if $self->param() is called without arguments bugfix: there can't be any whitespace in the pipeline name
-
Matthieu Muffato authored
-
Matthieu Muffato authored
* version/2.3: Copyright update Copyright update Copyright update Copyright update Copyright update
-
Brandon Walts authored
-
Brandon Walts authored
-
Brandon Walts authored
-
Brandon Walts authored
documentation update: remove instructions to turn on respecialization when running beekeeper, as it is now on by default
-
Brandon Walts authored
-
Brandon Walts authored
-
- 26 May, 2018 11 commits
-
-
Matthieu Muffato authored
-
Matthieu Muffato authored
-
Matthieu Muffato authored
* version/2.2: Copyright update Copyright update Copyright update Copyright update
-
Matthieu Muffato authored
-
Matthieu Muffato authored
* version/2.1: Copyright update Copyright update Copyright update
-
Matthieu Muffato authored
-
Matthieu Muffato authored
* version/2.0: Copyright update Copyright update
-
Matthieu Muffato authored
-
Matthieu Muffato authored
* version/1.9: Copyright update
-
Matthieu Muffato authored
-
Matthieu Muffato authored
This is especially the case of Compara, not much eHive.
-
- 25 May, 2018 1 commit
-
-
Matthieu Muffato authored
-
- 24 May, 2018 1 commit
-
-
Matthieu Muffato authored
-