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  1. 13 Dec, 2017 8 commits
  2. 12 Dec, 2017 8 commits
  3. 11 Dec, 2017 1 commit
  4. 01 Dec, 2017 1 commit
    • Matthieu Muffato's avatar
      Protect the UPDATE (similar to other UPDATEs of the worker table in Queen too) · a17a2d4d
      Matthieu Muffato authored
      When the worker table gets busy, the UPDATEs can fail because of timeout (see
      below), so we "protect" them with our beloved protected_prepare_execute.
      
      Beekeeper : loop #20 ======================================================
      GarbageCollector:       Checking for lost Workers...
      GarbageCollector:       [Queen:] out of 2 Workers that haven't checked in during the last 5 seconds...
      DBD::mysql::st execute failed: Lock wait timeout exceeded; try restarting transaction at /homes/muffato/workspace/src/hive/master/modules/Bio/EnsEMBL/Hive/DBSQL/StatementHandle.pm line 119.
      DBD::mysql::st execute failed: Lock wait timeout exceeded; try restarting transaction at /homes/muffato/workspace/src/hive/master/modules/Bio/EnsEMBL/Hive/DBSQL/StatementHandle.pm line 119.
       at /homes/muffato/workspace/src/hive/master/modules/Bio/EnsEMBL/Hive/DBSQL/StatementHandle.pm line 145.
              Bio::EnsEMBL::Hive::DBSQL::StatementHandle::__ANON__(Bio::EnsEMBL::Hive::DBSQL::StatementHandle=HASH(0x3c294f0), 14) called at /homes/muffato/workspace/src/hive/master/modules/Bio/EnsEMBL/Hive/Queen.pm line 485
              Bio::EnsEMBL::Hive::Queen::check_for_dead_workers(Bio::EnsEMBL::Hive::Queen=HASH(0x3916fc0), Bio::EnsEMBL::Hive::Valley=HASH(0x35e7c08), 0) called at /homes/muffato/workspace/src/hive/master/scripts/beekeeper.pl line 501
              main::run_autonomously(HASH(0x222ce18), Bio::EnsEMBL::Hive::HivePipeline=HASH(0x34e1aa0), -1, "FOREVER", Bio::EnsEMBL::Hive::Valley=HASH(0x35e7c08), ARRAY(0x3a6c0c8), undef, undef, ...) called at /homes/muffato/workspace/src/hive/master/scripts/beekeeper.pl line 378
              main::main() called at /homes/muffato/workspace/src/hive/master/scripts/beekeeper.pl line 30
      a17a2d4d
  5. 29 Nov, 2017 1 commit
  6. 28 Nov, 2017 2 commits
  7. 27 Nov, 2017 4 commits
  8. 24 Nov, 2017 5 commits
  9. 21 Nov, 2017 5 commits
  10. 14 Nov, 2017 4 commits
  11. 13 Nov, 2017 1 commit