Commits · dfbfa4e437b68efac171e0053b7c7f9808ba0484 · ensembl-gh-mirror / ensembl-hive · GitLab

This project is mirrored from https://:*****@github.com/Ensembl/ensembl-hive.git. Pull mirroring updated Aug 18, 2022.

19 Sep, 2017 3 commits
- Let beekeeper exit with code 1 when there are errors · dfbfa4e4
  Matthieu Muffato authored Sep 19, 2017
  
  dfbfa4e4
- We know we can run up to 10,000 workers on the EBI LSF installation · d3223edd
  Matthieu Muffato authored Sep 19, 2017
  
  d3223edd
- bugfix: the string was not interpolated · 9332175d
  Matthieu Muffato authored Sep 19, 2017
  
  9332175d
18 Sep, 2017 4 commits
- Added a generic test for alternative meadows (long-multiplication pipeline) · f3b26eaf
  Matthieu Muffato authored Sep 18, 2017
  
  f3b26eaf
- Should also test that the meadow returns pids · a61c7737
  Matthieu Muffato authored Sep 18, 2017
  
  a61c7737
- Merge branch 'version/2.4' · a50e3fa7
  Matthieu Muffato authored Sep 18, 2017
```
* version/2.4:
  bugfix: Time::Piece is required
```
  a50e3fa7
- bugfix: Time::Piece is required · 7fba3bd4
  Matthieu Muffato authored Sep 18, 2017
  
  7fba3bd4
14 Sep, 2017 1 commit
- update to meadow configs in hive_config.json · c9e7f9a3
  Brandon Walts authored Sep 14, 2017
  
  c9e7f9a3
11 Sep, 2017 2 commits
- Added an option in SystemCmd to parse a file in order to generate dataflow events · d1c1aa95
  Matthieu Muffato authored May 20, 2017
  
  d1c1aa95
- bugfix: non-READY jobs should also become SEMAPHORED, unless they are running · 789dff18
  Matthieu Muffato authored Sep 11, 2017
```
Running jobs are claimed by workers, and workers don't expect jobs to
become bloked again, so they would ignore the SEMAPHORED state anyway
```
  789dff18
09 Sep, 2017 1 commit
- Added another transaction error to the list that DBConnection catches · 2bba96a1
  Matthieu Muffato authored May 03, 2017
  
  2bba96a1
07 Sep, 2017 2 commits
- Github doesn't follow symlinks, so this is not really needed · 14a8c971
  Matthieu Muffato authored Sep 07, 2017
  
  14a8c971
- Converted the changelog to RestructuredText · 219a2b4e
  Matthieu Muffato authored Sep 07, 2017
  
  219a2b4e
06 Sep, 2017 5 commits
- Changed the PDF fonts (following dtinth/rtfd-protips) · cc7a99f6
  Matthieu Muffato authored Aug 25, 2017
  
  cc7a99f6
- Exclude the cover_db directory too · 06a5cac4
  Matthieu Muffato authored Sep 06, 2017
  
  06a5cac4
- Exclude BioPerl from the ascii test · 71e570ed
  Matthieu Muffato authored Sep 06, 2017
  
  71e570ed
- Enforce (almost) all files to be in ASCII · df00abe6
  Matthieu Muffato authored Sep 05, 2017
  
  df00abe6
- Restored the initial colouring with the :hivestatus: role (and removed non-ASCII characters) · 995f0fed
  Matthieu Muffato authored Sep 05, 2017
  
  995f0fed
05 Sep, 2017 1 commit
- bugfix: the GRANT should be done _before_ the permissions are needed ! · c75c2e33
  Matthieu Muffato authored Sep 05, 2017
  
  c75c2e33
04 Sep, 2017 1 commit
- Make sure that the "travis" user is allowed to do everything it needs in the database · a368cd40
  Matthieu Muffato authored Sep 04, 2017
```
With that, we can use Travis' "trusty" containers
```
  a368cd40
31 Aug, 2017 1 commit
- updated introductory text in index.rst · 0efd6064
  Brandon Walts authored Aug 31, 2017
  
  0efd6064
24 Aug, 2017 15 commits
- Applied a trick found in hypriot/rpi-ruby to reduce the size of the image · ca28673c
  Matthieu Muffato authored Aug 23, 2017
  
  ca28673c
- bugfix: only the pending workers of the current user should limit the scheduler · 102021c8
  Matthieu Muffato authored Aug 24, 2017
```
because on the farm, jobs from different users are scheduled independently
```
  102021c8
- Complain if it cannot parse the file · 13c2b465
  Matthieu Muffato authored Aug 24, 2017
  
  13c2b465
- Automatic copyright dates and settings from a shared variable · 716d11c3
  Matthieu Muffato authored Aug 24, 2017
  
  716d11c3
- Only create the temporary files once, and under _build/ so that they don't clutter the filesystem · 2d46d88e
  Matthieu Muffato authored Aug 24, 2017
  
  2d46d88e
- bugfix: the file may not exist · 3cca9c10
  Matthieu Muffato authored Aug 24, 2017
  
  3cca9c10
- read generate_graph's standard output to save having to create a temporary file · 81bcdeea
  Matthieu Muffato authored Aug 24, 2017
  
  81bcdeea
- Allow running generate_graph.pl with a format but no output file (use stdout) · 794d1805
  Matthieu Muffato authored Aug 24, 2017
  
  794d1805
- Remove temporary files created by pod2html · 3a1ed4c2
  Matthieu Muffato authored Aug 24, 2017
  
  3a1ed4c2
- Factored out some common parameters for all languages · c98ca922
  Matthieu Muffato authored Aug 24, 2017
```
Added HTML timestamps and the source browser for all languages
```
  c98ca922
- More generic commands to cleanup _build/ · 84fc4007
  Matthieu Muffato authored Aug 24, 2017
  
  84fc4007
- Moved the RTD upgrade files to _build to keep it tidy · db18baec
  Matthieu Muffato authored Aug 24, 2017
  
  db18baec
- Properly handle RTD (i.e. multi-stage runs vs reruns) and only rebuild Doxygen when needed · 6c8d1727
  Matthieu Muffato authored Aug 24, 2017
  
  6c8d1727
- Clarified the code by introducing variables · 10e84c00
  Matthieu Muffato authored Aug 24, 2017
  
  10e84c00
- Define the doxygen build location in a single place, and pass it on to the other scripts · 0a7a6b09
  Matthieu Muffato authored Aug 23, 2017
  
  0a7a6b09
23 Aug, 2017 4 commits
- Added a section about ReadTheDocs · 07d2cf13
  Matthieu Muffato authored Aug 24, 2017
  
  07d2cf13
- Prettier names · 4bb7323a
  Matthieu Muffato authored Aug 23, 2017
  
  4bb7323a
- Automatically find the version from git · 92d96aab
  Matthieu Muffato authored Aug 23, 2017
  
  92d96aab
- Also regenerate the scripts documentation with a Sphinx extension · 293f3185
  Matthieu Muffato authored Aug 23, 2017
  
  293f3185