GitLab

bugfix [to ee51e74e] : restore the password-hiding functionality between beekeeper.pl and runWorker.pl

ResourceDescription expanded to include both submission_cmd_args and worker_cmd_args. Both args can be specified in a PipeConfig file.

Registry support is now cenralised in DBAdaptor, so scripts just pass reg_* options into the constructor. Passing -reg_type allows to connect to originally non-Hive Registry entries.

included a new -nosqlvc flag in beekeeper.pl and runWorker.pl to overcome the version restriction in non-critical cases

changed the interface of balance_semaphores() : pass in $filter_analysis_id instead of $filter_analysis

new 'hive_meta' table to keep hive_sql_schema_version (=number of patches), hive_pipeline_name and hive_use_triggers

Changed an 'our' global variable to ENV{EHIVE_ROOT_DIR} to allow API-only users to set it and work as usual

given -job_id Scheduler should take the Analysis into account and only submit a Worker for this Analysis

All Hive scripts now detect $::hive_root_dir and use it for setting the @INC so manual setting of PERL5LIB is only needed if using API directly

make sure beekeeper.pl runs runWorker.pl from its own scripts directory (ignore the one in the path)

added command line options -submit_stdout_file and -submit_stderr_file to peek into submission output/error streams

removed the "compile_module_once" option as the only way to compile modules now is once after specialization

make Valley into Configurable and move SubmitWorkersMax into Valley's context, because it is more "global" than a Meadow

simplification of the interface: scripts no longer understand --user/--password/--host/--port/--database and require --url instead