This project is mirrored from https://:*****@github.com/Ensembl/ensembl-hive.git.
Pull mirroring updated .
- 19 May, 2016 2 commits
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Leo Gordon authored
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Leo Gordon authored
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- 13 May, 2016 1 commit
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Matthieu Muffato authored
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- 12 May, 2016 1 commit
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Leo Gordon authored
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- 11 May, 2016 16 commits
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Matthieu Muffato authored
* java: (37 commits) Moved the guest-language tests to their own file [java] Given the Worker life-cycle we can assume that the wrapper has been compiled recently [java] Hidden option to check for type conversions [java] Note for later [java] More logical structure [java] The list was missing Long, so better to use the super-class [java] More checks of the debug level + minimum is WARN debug for travis [Java] Added "version" task in ant [Java/LongMult] Make a unique list of jobs because PostgreSQL doesn't have INSERT IGNORE Slower loop to allow the Java workers to spawn For this to work, Java obviously has to be installed typo Changed the default debug levels (higher level = more verbose) bugfix: was using the wrong argument bugfix: exec() doesn't like undefs Copyright update Moved the Java config file to Examples/ and included it to the test-suite .gitignore update to only match directories under wrappers/python3 hides eHive jars in git ...
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Matthieu Muffato authored
There is a trick ! They're in fact the same script :) By looking at $0 the script can detect which type of config it should run
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Matthieu Muffato authored
It should make the worker much faster
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Matthieu Muffato authored
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Matthieu Muffato authored
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Matthieu Muffato authored
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Matthieu Muffato authored
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Matthieu Muffato authored
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Matthieu Muffato authored
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Matthieu Muffato authored
* master: The unit-test automatically finds all the LongMult flavours bugfix: the accu definition should have been changed at the same time as the others
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Matthieu Muffato authored
* version/2.4: The unit-test automatically finds all the LongMult flavours bugfix: the accu definition should have been changed at the same time as the others
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Matthieu Muffato authored
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Matthieu Muffato authored
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Matthieu Muffato authored
* master: (63 commits) bugfix: $pre_cond_groups could be an empty, which raises a warning bugfix: make sure synonymous Accu sinks of the same pipeline are correctly placed in their boxes. Thanks to Holly for reporting fixed kmer.t pipeline urls to loop over multiple dbs Added new kmer example PipeConfigs, Runnables, and tests More comments about the use of INPUT_PLUS in the LongMult pipelines allow refreshing of Storable/Cacheable objects and refresh Analysis in Worker to check for HIVE_OVERLOAD bugfix: rounding the float before storing as an integer to avoid warnings; thanks to Michael Paulini for reporting shut up the chatty "check-point" log message generator of the tail trimmer bugfix: make sure we pause the timer to avoid accumulating running totals added optional Accumulator::accu_input_variable parameter, changed examples+tests accordingly removed the complicated analysis_id2rc_name mapping that needed extra db activity -- doing it via collections now strict check for all provided arguments to help eliminate human error Documentation update to reflect the latest changes bugfix: more accurrate way of detecting that there is nothing to dump Don't die if a table doesn't exist bugfix: a file should be created even if there is nothing to dump bugfix: die if the input_id is not a valid hash [test-suite] Obviously the unit-test has to match the code ... bugifx: don't mark the job as DONE if it hasn't successfully dataflown to #-1 Fixed triggers to work with role table and added PostgreSQL trigger support. Works in simple cases, needs heavier testing. ...
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Matthieu Muffato authored
* version/2.4: bugfix: $pre_cond_groups could be an empty, which raises a warning
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Matthieu Muffato authored
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- 05 May, 2016 2 commits
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Leo Gordon authored
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Leo Gordon authored
bugfix: make sure synonymous Accu sinks of the same pipeline are correctly placed in their boxes. Thanks to Holly for reporting
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- 27 Apr, 2016 2 commits
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Brandon Walts authored
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Brandon Walts authored
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- 26 Apr, 2016 9 commits
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Matthieu Muffato authored
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Leo Gordon authored
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Leo Gordon authored
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Leo Gordon authored
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Leo Gordon authored
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Leo Gordon authored
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Leo Gordon authored
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Leo Gordon authored
allow refreshing of Storable/Cacheable objects and refresh Analysis in Worker to check for HIVE_OVERLOAD
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Leo Gordon authored
bugfix: rounding the float before storing as an integer to avoid warnings; thanks to Michael Paulini for reporting
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- 25 Apr, 2016 7 commits
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Leo Gordon authored
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Leo Gordon authored
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Leo Gordon authored
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Leo Gordon authored
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Leo Gordon authored
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Leo Gordon authored
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Leo Gordon authored
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