GitLab

Yearly copyright update - 2022 for version/2.5

* version/2.6:
  Display pipeline name and url at each iteration
  ignore failures in coverage testing

* version/2.5:
  ignore failures in coverage testing

* version/2.6:
  Making bacct options configurable according to cluster
  update documentation related to JSON serialisation of events including dataflow
  Create example PipeConfig using SystemCmd to create dataflow from a JSON file

* version/2.5:
  update documentation related to JSON serialisation of events including dataflow
  Create example PipeConfig using SystemCmd to create dataflow from a JSON file

* version/2.6:
  convert libdbi from apt-get to manual download
  update requirements.txt for readthedocs compatibility

* version/2.5:
  convert libdbi from apt-get to manual download
  update requirements.txt for readthedocs compatibility

* version/2.6:
  update bacct command line for codon compatibility

* version/2.6:
  update version number in documentation

* version/2.5:
  When using a tweak to set a resource description, set the resource class too
  [ENSCORESW-3002] Forbid setting a resource-class that doesn't exist
  Analysis must have a resource class (because analysis_base.resource_class_id is NOT NULL and a foreign key)
  Clear error message if the tweak attemps to change the dbID

Added a test to check that we can create a resource class and use it in the same tweak_pipeline.pl invocation

Analysis must have a resource class (because analysis_base.resource_class_id is NOT NULL and a foreign key)

Analysis must have a resource class (because analysis_base.resource_class_id is NOT NULL and a foreign key)

* version/2.5:
  rework setting of ensembl_cvs_root_dir in response to user bug report

* version/2.5:
  Fix ensembl_csv_root_dir value setting priorities
  EnsemblGeneric_conf checks for ENSEMBL_ROOT_DIR and ENSEMBL_CSV_ROOT_DIR
  typo
  Don't put the schema definition there, as it may go out of sync (it already has !)