Commits · sql_schema_59_start · ensembl-gh-mirror / ensembl-hive · GitLab

This project is mirrored from https://:*****@github.com/Ensembl/ensembl-hive.git. Pull mirroring updated Jan 30, 2023.

16 Apr, 2014 1 commit
- schema_change: switching to using worker_resource_usage table for all Meadows · 6726ec54
  Leo Gordon authored Apr 16, 2014
  
  6726ec54
11 Apr, 2014 3 commits
- Pulling in the temp_dir cleanup fix · 61069ad7
  Leo Gordon authored Apr 11, 2014
  
  61069ad7
- stop relying on Dumper and display more meaningful info about objects being updated · 0d1278bb
  Leo Gordon authored Apr 11, 2014
  
  0d1278bb
- went back to printing toString() when registering new Cacheable objects · 3f3d6c82
  Leo Gordon authored Apr 11, 2014
  
  3f3d6c82
10 Apr, 2014 4 commits
- switch PipelineWideParameters to the common cache (from a simple hash) · 513dfa4e
  Leo Gordon authored Apr 10, 2014
  
  513dfa4e
- switch MetaParameters to the common cache (from a simple hash) · 2e01559e
  Leo Gordon authored Apr 09, 2014
  
  2e01559e
- Merge branch 'version/1.9' into version/2.0 · 6dc0d105
  Matthieu Muffato authored Apr 10, 2014
```
* version/1.9:
  Really cleans-up the temp directory if it has been created by a previous worker
```
  6dc0d105
- Really cleans-up the temp directory if it has been created by a previous worker · fe8bef7c
  Matthieu Muffato authored Apr 10, 2014
  
  fe8bef7c
09 Apr, 2014 2 commits
- allow BaseAdaptor to store_of_update anonymous hashrefs as well as objects;... · d2e61710
  Leo Gordon authored Apr 09, 2014
```
allow BaseAdaptor to store_of_update anonymous hashrefs as well as objects; rely on Cacheable::unikey() for a unique key; map objectrefs back to their ids
```
  d2e61710
- allow anonymous hashrefs to be cached in Cacheable/NakedTable classes · 77f376b0
  Leo Gordon authored Apr 09, 2014
  
  77f376b0
04 Apr, 2014 3 commits
- Pulling in the log_message.status U= { 'CLAIMED' } fix · 88bca4bd
  Leo Gordon authored Apr 04, 2014
  
  88bca4bd
- Pulling in the log_message.status U= { 'CLAIMED' } fix · 2311145f
  Leo Gordon authored Apr 04, 2014
  
  2311145f
- bugfix: added CLAIMED state to log_message.status to capture parameter parsing problems · 01bc9d89
  Leo Gordon authored Apr 04, 2014
  
  01bc9d89
03 Apr, 2014 2 commits
- -hive_no_init : a quick way to switch off pipeline_create_commands ( NB: not... · 399e6b08
  Leo Gordon authored Apr 03, 2014
```
-hive_no_init : a quick way to switch off pipeline_create_commands ( NB: not specific to a particular -pipeconfig )
```
  399e6b08
- bugfix [to 4078bd68 ] : do not print the legend on the first pass · f8437896
  Leo Gordon authored Apr 03, 2014
  
  f8437896
02 Apr, 2014 1 commit
- cleanup: hashed_by_dbID() method is not really used · 7a76279e
  Leo Gordon authored Apr 02, 2014
  
  7a76279e
01 Apr, 2014 4 commits
- support multiple -pipeconfig options (each applied on top of the previous state of the graph) · 3e5a2101
  Leo Gordon authored Apr 01, 2014
  
  3e5a2101
- Cacheable classes support unique index within each collection to avoid creating+adding duplicates · 75bc0132
  Leo Gordon authored Apr 01, 2014
  
  75bc0132
- allow both compared entities to be undefined (two undefs considered equal) · 07c65235
  Leo Gordon authored Apr 01, 2014
  
  07c65235
- bugfix: make sure substitutions mentioned in show_useful_commands are actually substituted · 4078bd68
  Leo Gordon authored Apr 01, 2014
  
  4078bd68
28 Mar, 2014 2 commits
- api_change: moved caching of MetaParameters and PipelineWideParameters into Cacheable · 01684654
  Leo Gordon authored Mar 28, 2014
  
  01684654
- bugfix [to 665ea6cd ] : properly parse param_hash from MetaAdaptor · 1c1f70c9
  Leo Gordon authored Mar 28, 2014
  
  1c1f70c9
27 Mar, 2014 1 commit
- new schema (v.58) diagram · 70dc39cc
  Leo Gordon authored Mar 26, 2014
  
  70dc39cc
26 Mar, 2014 2 commits
- schema_change: remove the 'monitor' table in favour of generate_timeline.pl script · 82f2ceab
  Leo Gordon authored Mar 26, 2014
  
  82f2ceab
- schema_change: pipeline_wide_parameters added instead of meta for clearer separation · fcab2f08
  Leo Gordon authored Mar 25, 2014
  
  fcab2f08
25 Mar, 2014 4 commits
- bugfix: make sure -wait_for is working properly again (do not auto-initialize Cacheable) · f562ba28
  Leo Gordon authored Mar 25, 2014
  
  f562ba28
- Do not assume any error is related to the format. Just display it as it is. · ae3e65fd
  Leo Gordon authored Mar 25, 2014
  
  ae3e65fd
- pulling in the -wait_for test · 8a12d750
  Leo Gordon authored Mar 25, 2014
  
  8a12d750
- another version of LongMult pipeline to test -wait_for rules · cb3eb95f
  Leo Gordon authored Mar 25, 2014
  
  cb3eb95f
24 Mar, 2014 1 commit
- bugfix: generate_graph should also be able to display pipelines without semaphores · 32d13629
  Leo Gordon authored Mar 24, 2014
  
  32d13629
21 Mar, 2014 2 commits
- api_change: renamed Hive::DBSQL::MetaContainer --> PipelineWideParametersAdaptor · a8a75be0
  Leo Gordon authored Mar 21, 2014
  
  a8a75be0
- Moved the caching from Hive.pm into the specific storable classes themselves... · a695d9b3
  Leo Gordon authored Mar 21, 2014
```
Moved the caching from Hive.pm into the specific storable classes themselves (via Cacheable.pm) to better conform to Active Record pattern
```
  a695d9b3
20 Mar, 2014 2 commits
- moved loading/saving of the collections into DBAdaptor module · 13f462ad
  Leo Gordon authored Mar 20, 2014
  
  13f462ad
- cosmetic: removed mention of no-longer-used options -analysis_topup and -job_topup from the docs · 6e8b91eb
  Leo Gordon authored Mar 20, 2014
  
  6e8b91eb
18 Mar, 2014 6 commits
- do not require connection parameters when drawing a diagram from a -pipeconfig · a28ef353
  Leo Gordon authored Mar 18, 2014
  
  a28ef353
- properly display foreign analyses (ctrl sources and dataflow targets) on the diagram · a1fa4ae0
  Leo Gordon authored Mar 18, 2014
  
  a1fa4ae0
- using display_name() to distinguish between own and foreign nodes with the same name · 381d510f
  Leo Gordon authored Mar 18, 2014
  
  381d510f
- better error reporting · 5fe24972
  Leo Gordon authored Mar 18, 2014
  
  5fe24972
- Pulling in URLFactory bugfix · 57360a9e
  Leo Gordon authored Mar 18, 2014
  
  57360a9e
- bugfix: do not crash when given full URL to analyses|tables · 5a3beced
  Leo Gordon authored Mar 18, 2014
  
  5a3beced