This project is mirrored from https://github.com/Ensembl/ensembl-hive.git. Pull mirroring updated .
  1. 13 Jan, 2015 2 commits
  2. 07 Jan, 2015 2 commits
  3. 05 Jan, 2015 5 commits
  4. 22 Dec, 2014 4 commits
  5. 04 Dec, 2014 2 commits
    • Matthieu Muffato's avatar
      Numbers are returned as real numbers, not strings; · de29ee23
      Matthieu Muffato authored
      This is needed for pipeline_wide_parameters as each value is destringified
      independently and the JSON writer would otherwise force writing numbers as
      strings
      de29ee23
    • Matthieu Muffato's avatar
      Clearer flags in register_worker_death() · 321e4b53
      Matthieu Muffato authored
      "self-burial" had two meanings:
       - should we release the undone jobs ?
       - should we update the last_check_in field in the worker table ?
      The former can simply be found by checking whether the worker already has a
      role attached to it.
      The latter is only set when a worker registers its own death, and is not set
      by the GarbageCollector.
      321e4b53
  6. 07 Nov, 2014 1 commit
  7. 05 Nov, 2014 6 commits
  8. 29 Oct, 2014 5 commits
  9. 27 Oct, 2014 9 commits
  10. 25 Oct, 2014 3 commits
    • Matthieu Muffato's avatar
      Pulling in two bugfixes from version/2.1 · e56909c5
      Matthieu Muffato authored
        bugfix: jobs could not trigger MEMLIMIT events
        bugfix: release the unfinished batch if the worker is contaminated
      e56909c5
    • Matthieu Muffato's avatar
      bugfix: jobs could not trigger MEMLIMIT events · 91de34e4
      Matthieu Muffato authored
      (and probably RUNLIMIT as well)
      The problem was in Queen::register_worker_death(). The code fetches the
      current role, finalizes it, and then updates the worker table. The role
      that is fetched from the database with fetch_last_unfinished_by_worker_id()
      is not connected to any workers and later, when
      AnalysisJobAdaptor::release_undone_jobs_from_role() needs to know the cause
      of death and the number of work done by the worker, the role would load
      another instance of the worker using the information currently stored in
      the database, that is: before it has been updated.
      Hence, the code was complaining that cause_of_death was not populated.
      By associating the role to the worker, we allow the method to read the
      existing information
      91de34e4
    • Matthieu Muffato's avatar
      bugfix: release the unfinished batch if the worker is contaminated · 1c4579c9
      Matthieu Muffato authored
      This is done by setting "self_burial" to 0
      1c4579c9
  11. 21 Oct, 2014 1 commit