NAME

    db_cmd.pl

SYNOPSIS

    db_cmd.pl {-url <url> | [-reg_conf <reg_conf>] -reg_alias <reg_alias> [-reg_type <reg_type>] } [ -sql <sql_command> ] [ -extra <extra_params> ] [ -to_params | -verbose ]

DESCRIPTION

    db_cmd.pl is a generic script that connects you interactively to your database using either URL or Registry and optionally runs an SQL command.
    -url is exclusive to -reg_alias. -reg_type is only needed if several databases map to that alias / species.

USAGE EXAMPLES

    db_cmd.pl -url "mysql://ensadmin:${ENSADMIN_PSW}@localhost:3306/" -sql 'CREATE DATABASE lg4_long_mult'
    db_cmd.pl -url "mysql://ensadmin:${ENSADMIN_PSW}@localhost:3306/lg4_long_mult"
    db_cmd.pl -url "mysql://ensadmin:${ENSADMIN_PSW}@localhost:3306/lg4_long_mult" -sql 'SELECT * FROM analysis_base' -extra='--html'
    eval mysqldump -t `db_cmd.pl -url "mysql://ensadmin:${ENSADMIN_PSW}@localhost:3306/lg4_long_mult" -to_params` worker

    db_cmd.pl -reg_conf ${ENSEMBL_CVS_ROOT_DIR}/ensembl-compara/scripts/pipeline/production_reg_conf.pl -reg_alias compara_master
    db_cmd.pl -reg_conf ${ENSEMBL_CVS_ROOT_DIR}/ensembl-compara/scripts/pipeline/production_reg_conf.pl -reg_alias mus_musculus   -reg_type core
    db_cmd.pl -reg_conf ${ENSEMBL_CVS_ROOT_DIR}/ensembl-compara/scripts/pipeline/production_reg_conf.pl -reg_alias squirrel       -reg_type core -sql 'SELECT * FROM coord_system'

LICENSE

    Copyright [1999-2015] Wellcome Trust Sanger Institute and the EMBL-European Bioinformatics Institute
    Copyright [2016] EMBL-European Bioinformatics Institute

    Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License.
    You may obtain a copy of the License at

         http://www.apache.org/licenses/LICENSE-2.0

    Unless required by applicable law or agreed to in writing, software distributed under the License
    is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
    See the License for the specific language governing permissions and limitations under the License.

CONTACT

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