NAME

    generate_graph.pl

SYNOPSIS

    ./generate_graph.pl [ -url mysql://user:pass@server:port/dbname ] [-pipeconfig TopUp_conf.pm]* -output OUTPUT_LOC [-help]

DESCRIPTION

    This program will generate a graphical representation of your hive pipeline.
    This includes visalising the flow of data from the different analyses, blocking
    rules & table writers. The graph is also coloured to indicate the stage
    an analysis is at. The colours & fonts used can be configured via
    hive_config.json configuration file.

OPTIONS

--url

    url defining where hive database is located

--reg_conf

    path to a Registry configuration file

--reg_alias

    species/alias name for the Hive DBAdaptor

--pipeconfig

    A pipeline configuration file that can function both as the initial source of pipeline structure or as a top-up config.
    This option can now be used multiple times for multiple top-ups.

--output

    Location of the file to write to.
    The file extension (.png , .jpeg , .dot , .gif , .ps) will define the output format.

EXTERNAL DEPENDENCIES

    GraphViz

LICENSE

    Copyright [1999-2015] Wellcome Trust Sanger Institute and the EMBL-European Bioinformatics Institute
    Copyright [2016] EMBL-European Bioinformatics Institute

    Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License.
    You may obtain a copy of the License at

         http://www.apache.org/licenses/LICENSE-2.0

    Unless required by applicable law or agreed to in writing, software distributed under the License
    is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
    See the License for the specific language governing permissions and limitations under the License.

CONTACT

    Please subscribe to the Hive mailing list:  http://listserver.ebi.ac.uk/mailman/listinfo/ehive-users  to discuss Hive-related questions or to be notified of our updates