Skip to content
GitLab
Menu
Projects
Groups
Snippets
Loading...
Help
Help
Support
Community forum
Keyboard shortcuts
?
Submit feedback
Sign in
Toggle navigation
Menu
Open sidebar
ensembl-gh-mirror
ensembl-io
Commits
1df1a346
Commit
1df1a346
authored
Oct 11, 2018
by
Tiago Grego
Browse files
BulkFetcherFeature no longer requires biotype_mapper param
parent
757b8ca1
Changes
2
Hide whitespace changes
Inline
Side-by-side
Showing
2 changed files
with
0 additions
and
5 deletions
+0
-5
modules/t/rdf/rdf_serialiser.t
modules/t/rdf/rdf_serialiser.t
+0
-2
modules/t/rdf/rdf_xrefs_serialiser.t
modules/t/rdf/rdf_xrefs_serialiser.t
+0
-3
No files found.
modules/t/rdf/rdf_serialiser.t
View file @
1df1a346
...
...
@@ -27,7 +27,6 @@ use IO::String;
use
Bio::EnsEMBL::Test::
MultiTestDB
;
use
Bio::EnsEMBL::
CoordSystem
;
use
Bio::EnsEMBL::
Slice
;
use
Bio::EnsEMBL::Utils::
SequenceOntologyMapper
;
use
Bio::EnsEMBL::IO::Translator::
Slice
;
use
Bio::EnsEMBL::IO::Translator::
BulkFetcherFeature
;
...
...
@@ -184,7 +183,6 @@ my $slice_trans = Bio::EnsEMBL::IO::Translator::Slice->new(
my
$feature_trans
=
Bio::EnsEMBL::IO::Translator::
BulkFetcherFeature
->
new
(
version
=>
$version
,
xref_mapping_file
=>
"
$Bin
/xref_LOD_mapping.json
",
biotype_mapper
=>
Bio::EnsEMBL::Utils::
SequenceOntologyMapper
->
new
(
$omulti
->
get_DBAdaptor
('
ontology
')
->
get_OntologyTermAdaptor
()),
adaptor
=>
$adaptor
);
...
...
modules/t/rdf/rdf_xrefs_serialiser.t
View file @
1df1a346
...
...
@@ -26,8 +26,6 @@ use IO::String;
use
Bio::EnsEMBL::Test::
MultiTestDB
;
use
Bio::EnsEMBL::Utils::
SequenceOntologyMapper
;
use
Bio::EnsEMBL::IO::Translator::
BulkFetcherFeature
;
use
Bio::EnsEMBL::IO::Object::
RDF
;
...
...
@@ -116,7 +114,6 @@ RDF
my
$feature_trans
=
Bio::EnsEMBL::IO::Translator::
BulkFetcherFeature
->
new
(
version
=>
$version
,
xref_mapping_file
=>
"
$Bin
/xref_LOD_mapping.json
",
biotype_mapper
=>
Bio::EnsEMBL::Utils::
SequenceOntologyMapper
->
new
(
$omulti
->
get_DBAdaptor
('
ontology
')
->
get_OntologyTermAdaptor
()),
adaptor
=>
$adaptor
);
...
...
Write
Preview
Markdown
is supported
0%
Try again
or
attach a new file
.
Attach a file
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Cancel
Please
register
or
sign in
to comment