Commit 1df1a346 authored by Tiago Grego's avatar Tiago Grego
Browse files

BulkFetcherFeature no longer requires biotype_mapper param

parent 757b8ca1
......@@ -27,7 +27,6 @@ use IO::String;
use Bio::EnsEMBL::Test::MultiTestDB;
use Bio::EnsEMBL::CoordSystem;
use Bio::EnsEMBL::Slice;
use Bio::EnsEMBL::Utils::SequenceOntologyMapper;
use Bio::EnsEMBL::IO::Translator::Slice;
use Bio::EnsEMBL::IO::Translator::BulkFetcherFeature;
......@@ -184,7 +183,6 @@ my $slice_trans = Bio::EnsEMBL::IO::Translator::Slice->new(
my $feature_trans = Bio::EnsEMBL::IO::Translator::BulkFetcherFeature->new(
version => $version,
xref_mapping_file => "$Bin/xref_LOD_mapping.json",
biotype_mapper => Bio::EnsEMBL::Utils::SequenceOntologyMapper->new($omulti->get_DBAdaptor('ontology')->get_OntologyTermAdaptor()),
adaptor => $adaptor
);
......
......@@ -26,8 +26,6 @@ use IO::String;
use Bio::EnsEMBL::Test::MultiTestDB;
use Bio::EnsEMBL::Utils::SequenceOntologyMapper;
use Bio::EnsEMBL::IO::Translator::BulkFetcherFeature;
use Bio::EnsEMBL::IO::Object::RDF;
......@@ -116,7 +114,6 @@ RDF
my $feature_trans = Bio::EnsEMBL::IO::Translator::BulkFetcherFeature->new(
version => $version,
xref_mapping_file => "$Bin/xref_LOD_mapping.json",
biotype_mapper => Bio::EnsEMBL::Utils::SequenceOntologyMapper->new($omulti->get_DBAdaptor('ontology')->get_OntologyTermAdaptor()),
adaptor => $adaptor
);
......
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