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ensembl-gh-mirror
ensembl-io
Commits
d0ba58d3
Commit
d0ba58d3
authored
Apr 23, 2019
by
Tiago Grego
Browse files
variation data object updated
parent
4a58b67f
Changes
1
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modules/t/vcf_serializer.t
modules/t/vcf_serializer.t
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modules/t/vcf_serializer.t
View file @
d0ba58d3
...
...
@@ -89,8 +89,7 @@ foreach my $var (@vars) {
my
$var_d
=
$var_data
{
$var
};
my
$var_obj
=
Bio::EnsEMBL::Variation::
Variation
->
new
(
-
NAME
=>
$var
,
-
ANCESTRAL_ALLELE
=>
$var_d
->
{'
aa
'}
-
NAME
=>
$var
);
#my %sample_genotypes = ();
...
...
@@ -112,7 +111,8 @@ foreach my $var (@vars) {
-
VARIATION_NAME
=>
$var
,
-
MINOR_ALLELE
=>
$var_d
->
{'
ma
'},
-
MINOR_ALLELE_FREQUENCY
=>
$var_d
->
{'
maf
'},
-
MINOR_ALLELE_COUNT
=>
$var_d
->
{'
mac
'}
-
MINOR_ALLELE_COUNT
=>
$var_d
->
{'
mac
'},
-
ANCESTRAL_ALLELE
=>
$var_d
->
{'
aa
'}
);
...
...
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