This project is mirrored from https://:*****@github.com/Ensembl/ensembl-io.git. Pull mirroring updated .
  1. 27 Sep, 2018 1 commit
  2. 15 Jan, 2018 1 commit
  3. 13 Nov, 2017 3 commits
  4. 14 Aug, 2017 1 commit
  5. 13 Jul, 2017 1 commit
    • Zhicheng Liu's avatar
      Add VCF4 format for validation · 13f4a7ce
      Zhicheng Liu authored
      Previoiusly because of the lack of VCF4 format definition, the user upload of VCF
      type data (stored in text) could not be validated. This change is intended to add
      this missing information so that those VCF records could be validated and parsed.
      
      Also add space as a valid delimiter in addition to tab. I know this is violating
      the VCF4.x spece. But I could not get tab delimited VCF record to work. I don't
      know why.
      
      Related to ENSEMBL-5050.
      13f4a7ce
  6. 17 Jan, 2017 1 commit
  7. 13 Dec, 2016 1 commit
  8. 21 Oct, 2016 1 commit
  9. 03 Oct, 2016 1 commit
  10. 01 Jul, 2016 1 commit
  11. 14 Jun, 2016 1 commit
  12. 05 May, 2016 1 commit
  13. 03 May, 2016 3 commits
  14. 08 Mar, 2016 1 commit
  15. 23 Feb, 2016 1 commit
    • William McLaren's avatar
      Alter genotype field return type · 2c03ed48
      William McLaren authored
      get_raw_samples_info() was returning a ":"-delimited string where
      the first element was the sample name. This broke downstream methods
      when the sample name contained ":", so the method has been changed
      to return a listref instead.
      2c03ed48
  16. 15 Jan, 2016 1 commit
  17. 04 Jan, 2016 1 commit
  18. 17 Aug, 2015 2 commits
    • Andy Yates's avatar
      Removing core from all files which could use an alternative. · e0fa3457
      Andy Yates authored
      It seems we have others within the team that would like to use
      ensembl-io but will not because of the core dependency. This commit
      attempts to
      
      1. Remove any use of Utils::Exception and replace it with Carp
      
      2. Remove any use of Utils::IO work_with_file and replace it with an
      open
      
      3. Remove any un-used import (there were a lot)
      
      Also this commit pulls up that simple_list.t is no longer a valid test
      because its dependencies are broken.
      e0fa3457
    • Andy Yates's avatar
      License was not correct. This is an Apache2 project. · dd5f1181
      Andy Yates authored
      In a number of places the Apache2 license was not applied, the older
      Apache-like license was applied or dates were wrong. A header LICENSE
      file was not present. It has now been added to all files.
      dd5f1181
  19. 14 Aug, 2015 1 commit
  20. 02 Jun, 2015 1 commit
  21. 01 Jun, 2015 1 commit
  22. 20 May, 2015 1 commit
  23. 19 May, 2015 1 commit
  24. 30 Mar, 2015 1 commit
  25. 16 Dec, 2014 1 commit
  26. 29 Oct, 2014 1 commit
  27. 24 Oct, 2014 1 commit
  28. 08 Oct, 2014 1 commit
  29. 19 Sep, 2014 1 commit
  30. 02 May, 2014 2 commits
  31. 24 Apr, 2014 1 commit
  32. 08 Apr, 2014 1 commit
  33. 07 Apr, 2014 1 commit
  34. 06 Mar, 2014 1 commit