Commits · 7ce07f86545a1ce8a6681383d7732451d0d7bc04 · ensembl-gh-mirror / ensembl-io

This project is mirrored from https://:*****@github.com/Ensembl/ensembl-io.git. Pull mirroring updated Jan 30, 2023.

27 Sep, 2018 2 commits
- perlcritic open file plus some housecleaning · 7ce07f86
  Tiago Grego authored Sep 27, 2018
  
  7ce07f86
- perlcritic open file plus some housecleaning · c16e9a21
  Tiago Grego authored Sep 27, 2018
  
  c16e9a21
26 Sep, 2018 4 commits
- Yearly copyright update · 180cfde9
  Tiago Grego authored Sep 26, 2018
  
  180cfde9
- patched test db · d84a3eb8
  Tiago Grego authored Sep 26, 2018
  
  d84a3eb8
- removed duplication · 473f2f48
  Tiago Grego authored Sep 26, 2018
  
  473f2f48
- merged master · 74eb54bd
  Tiago Grego authored Sep 26, 2018
  
  74eb54bd
21 Sep, 2018 2 commits
- Merge pull request #65 from at7/add_cadd_parser · 0d9284f7
  Tiago Grego authored Sep 21, 2018
```
Add cadd parser
```
  0d9284f7
- seek on no existing region seems to disagree with travis · 47ea6470
  Anja Thormann authored Sep 21, 2018
  
  47ea6470
19 Sep, 2018 3 commits
- added test and simplified if · 89e9ab35
  Irina Armean authored Sep 19, 2018
  
  89e9ab35
- add test example · 8b5d035b
  Irina Armean authored Sep 18, 2018
  
  8b5d035b
- update TabixParser to allow bgz · d90940b0
  Irina Armean authored Sep 18, 2018
  
  d90940b0
18 Sep, 2018 1 commit
- test non existing location or chromosome in seek · 449fc9b8
  Anja Thormann authored Sep 18, 2018
  
  449fc9b8
13 Sep, 2018 2 commits
- Parser for tabixed CADD file · 0be5003f
  Anja Thormann authored Sep 13, 2018
  
  0be5003f
- tests and test data for CADDTabix parser · 6e859f7f
  Anja Thormann authored Sep 13, 2018
  
  6e859f7f
10 Sep, 2018 8 commits
- eq_or_diff instead of cmp_bag · 25c47771
  Tiago Grego authored Sep 10, 2018
  
  25c47771
- missing module added · c6af5551
  Tiago Grego authored Sep 10, 2018
  
  c6af5551
- push on reference is experimental · aea32831
  Tiago Grego authored Sep 10, 2018
  
  aea32831
- each on reference is experimental · 07bf1412
  Tiago Grego authored Sep 10, 2018
  
  07bf1412
- fixed test that was failing due to random hash key mismatch · 972ac6bf
  Tiago Grego authored May 22, 2018
  
  972ac6bf
- replace random order behaviour with a sort on keys · 7251eb77
  Tiago Grego authored May 22, 2018
  
  7251eb77
- fixed bareword named_colours usage · 666cb042
  Tiago Grego authored May 21, 2018
  
  666cb042
- fixed hash comparison · 926edaa5
  Tiago Grego authored May 18, 2018
  
  926edaa5
14 Aug, 2018 1 commit
- Merge pull request #62 from ens-ap5/feature/bigInteract · 364d5143
  Premanand Achuthan authored Aug 14, 2018
```
Changes required to support bigInteract format - ENSWEB-4751
```
  364d5143
13 Aug, 2018 6 commits
- Fix test for bigInteract · e7cd61cc
  Anne Lyle authored Aug 13, 2018
  
  e7cd61cc
- Update test to use FindBin instead of hardcoaded path · 5341a976
  Anne Lyle authored Aug 13, 2018
  
  5341a976
- Extended bed tests and added test specifically for interaction format · e20b94e0
  Anne Lyle authored Aug 13, 2018
  
  e20b94e0
- Fixed issues with column index 0 · 7aeaa27a
  Anne Lyle authored Aug 13, 2018
  
  7aeaa27a
- Merge pull request #63 from Ensembl/test-file-path · f4b2b59f
  Tiago Grego authored Aug 13, 2018
```
Fix of hard coded test data file paths in tests
```
  f4b2b59f
- fixed hard coded test data files in tests · de7b7f65
  Tiago Grego authored May 22, 2018
  
  de7b7f65
02 Aug, 2018 1 commit
- Changes required to support bigInteract format - ENSWEB-4751 · 271b2c45
  Anne Lyle authored Aug 02, 2018
  
  271b2c45
01 Aug, 2018 2 commits
- Merge pull request #61 from ens-ap5/master · 2a099c3e
  Magali Ruffier authored Aug 01, 2018
```
Improvements to error reporting - ENSWEB-2052
```
  2a099c3e
- Added spaces as per review · c8eab89f
  Anne Lyle authored Aug 01, 2018
  
  c8eab89f
27 Jul, 2018 1 commit
- Improvements to error reporting - ENSWEB-2052 · aed80b75
  Anne Lyle authored Jul 27, 2018
  
  aed80b75
08 May, 2018 1 commit
- Merge pull request #57 from thibauthourlier/patch-1 · bd09f346
  Alessandro Vullo authored May 08, 2018
```
Genbank has removed GI identifier in the genbank files
```
  bd09f346
02 May, 2018 4 commits
- New tests and new test data · 2f6c0c05
  Thibaut Hourlier authored May 02, 2018
  
  2f6c0c05
- Allow the feature name to have non alphanumeric characters · c7898a06
  Thibaut Hourlier authored May 02, 2018
  
  c7898a06
- Make sure we are at the beginning of the record before parsing · 535f25d1
  Thibaut Hourlier authored May 02, 2018
  
  535f25d1
- Set GI to undef if not present · 63d73771
  Thibaut Hourlier authored May 02, 2018
  
  63d73771
30 Apr, 2018 2 commits
- [ENSCORESW-2727 ]. Missing parser borrowed from master. · 07a88c02
  Alessandro Vullo authored Apr 30, 2018
  
  07a88c02
- [ENSCORESW-2727 ]. Explicitly sets a delimiter as done in unified-design. · 68d55efb
  Alessandro Vullo authored Apr 30, 2018
  
  68d55efb