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  1. 21 Aug, 2017 2 commits
  2. 14 Aug, 2017 1 commit
  3. 19 Jul, 2017 3 commits
  4. 14 Jul, 2017 1 commit
    • Zhicheng Liu's avatar
      Remove space delimiter from VCF4 format · edaf23e3
      Zhicheng Liu authored
      as spaces can appear within a field which means it is not safe to use space
      as delimiter. Now I found a way to make tab delimiter work for me so the space
      is no longer needed anyway.
      edaf23e3
  5. 13 Jul, 2017 4 commits
  6. 28 Jun, 2017 2 commits
    • Zhicheng Liu's avatar
      Minor revisons ... · 99a3660e
      Zhicheng Liu authored
      based on Mag's review comments at this pull request:
      https://github.com/Ensembl/ensembl-io/pull/55
      99a3660e
    • Zhicheng Liu's avatar
      Rework on how Bio::DB::HTS is used in HTSAdaptor · 73e743ef
      Zhicheng Liu authored
      The Bio::DB::HTS object and other relatedHTS objects will be created
      only once within a single HTSAdaptor. They will have only one copy and
      be stored in $self->{_cache}->{_htsobj_handle}. Every use of HTS objects
      should through this copy.
      
      Also remove "close" calls to the HTS objects as these objects will
      handle their resources properly when exiting. The DESTROY methods to
      these objects has been added in
      https://github.com/Ensembl/Bio-DB-HTS/pull/50
      which will release the resources where needed.
      
      This will provide a uniform interface to HTS objects, making it more
      consistent. It prevents from creating multiple objects for the same
      file and hence more resouces efficient too.
      
      Also rename some variables to make them consistent throughout.
      
      Related to ENSEMBL-5035.
      73e743ef
  7. 27 Jun, 2017 2 commits
  8. 13 Jun, 2017 4 commits
  9. 12 Jun, 2017 2 commits
  10. 19 May, 2017 1 commit
  11. 14 Mar, 2017 2 commits
  12. 19 Jan, 2017 1 commit
  13. 17 Jan, 2017 1 commit
  14. 12 Jan, 2017 1 commit
  15. 04 Jan, 2017 5 commits
  16. 22 Dec, 2016 2 commits
  17. 13 Dec, 2016 1 commit
  18. 17 Nov, 2016 1 commit
  19. 11 Nov, 2016 1 commit
  20. 21 Oct, 2016 1 commit
  21. 10 Oct, 2016 2 commits