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    • Andy Yates's avatar
      Adding travis-ci tests · 38215ca7
      Andy Yates authored
      Switching to containers and fixing MySQL server issue
      
      Make zip quiet
      
      Switching to another libmysqlclient-dev dependency
      
      Build c code once we are in the install phase
      
      Forgot the relative pathing
      
      Set the path manually to kent src
      
      Some debug. I think it was missing MACHTYPE
      
      More debug
      
      Dir is called kent not jksrc
      
      Compiled files are in lib not inc
      
      Seems we need to compile with -fPIC
      
      Also need this change
      
      Suite running. Some errors still appearing. Need verbose
      
      Making tests work. They are not "fixed" just not erroring
      
      BigBed numeric problem and tabix parsers need the command line tabix binary. This is not right
      
      Missed a semicolon
      
      Mystery failure in BigBed. Switching to is will help
      
      Switching to 1 for strand
      
      Cache the perlbrew directory to speed up subsequent tests
      
      Cache apt
      
      Adding more directories to the cache
      
      Need to path to the shell script
      
      The missing space before ] is important
      
      Travis was slower using apt caching
      
      Need to path to tabix
      
      Only build when the resultant files or dirs are missing
      38215ca7