Attempting to fix the currently breaking test suite.
Created by: andrewyatz
THIS CANNOT BE MERGED IN YET. DO NOT MERGE
This branch is a set of changes to master to make sure the test suite runs once again. Already there have been some hidden bugs (seek() in BigWig not
-1 from the given start position) and removal of scripts masquerading as test cases.
There are still some issues with the VEP output code. From what I have seen the input file lacks the following columns
Are these actually fields in the VEP output or do they come from the final attributes set? Either the input file needs changing or the
VEP_output.pm parser needs changing.