Unverified Commit b1c8685b authored by Tiago Grego's avatar Tiago Grego Committed by GitHub

Merge branch 'master' into feature/osx_dmg

parents bb449368 5cff1958
language: "perl"
perl:
- "5.22"
os:
- linux
services: docker
before_install:
- docker pull smmebi/otter_test_update
- docker pull smmebi/otter_test_nomerge
install:
- cd ../
- export ROOT_PATH=$PWD
......@@ -17,11 +13,19 @@ install:
- git clone --branch master --depth 1 https://github.com/Ensembl/team_tools.git
- git clone --branch master --depth 1 https://github.com/Ensembl/webvm.git
- git clone --branch master --depth 1 https://github.com/Ensembl/webvm-deps.git
- cd webvm-deps/
- mkdir ensembl-branch-99/
- cd ensembl-branch-99/
- git clone --branch release/99 https://github.com/Ensembl/ensembl.git
- git clone --branch release/99 https://github.com/Ensembl/ensembl-variation.git
- git clone --branch release/99 https://github.com/Ensembl/ensembl-funcgen.git
- git clone --branch release/99 https://github.com/Ensembl/ensembl-compara.git
- cd ../../
- git clone --branch master --depth 1 https://github.com/Ensembl/zircon.git
- git clone --branch master --depth 1 https://github.com/Ensembl/PerlModules.git
script: "docker run -i --name devtest -v $ROOT_PATH/app:/loutre smmebi/otter_test_update:latest"
script: "docker run -i --name devtest -v $ROOT_PATH/app:/loutre smmebi/otter_test_nomerge:latest"
notifications:
slack:
......
-- Copyright [2018-2019] EMBL-European Bioinformatics Institute
--
-- Copyright [2018-2020] EMBL-European Bioinformatics Institute
--
-- Licensed under the Apache License, Version 2.0 (the "License");
-- you may not use this file except in compliance with the License.
-- You may obtain a copy of the License at
--
--
-- http://www.apache.org/licenses/LICENSE-2.0
--
--
-- Unless required by applicable law or agreed to in writing, software
-- distributed under the License is distributed on an "AS IS" BASIS,
-- WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
......
-- Copyright [2018-2019] EMBL-European Bioinformatics Institute
--
-- Copyright [2018-2020] EMBL-European Bioinformatics Institute
--
-- Licensed under the Apache License, Version 2.0 (the "License");
-- you may not use this file except in compliance with the License.
-- You may obtain a copy of the License at
--
--
-- http://www.apache.org/licenses/LICENSE-2.0
--
--
-- Unless required by applicable law or agreed to in writing, software
-- distributed under the License is distributed on an "AS IS" BASIS,
-- WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
......
# Copyright [2020] EMBL-European Bioinformatics Institute
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
# Attempts to set up a sane otter environment for running or testing otter
# using *this* ensembl-otter tree.
#
......
#! /bin/sh
# Copyright [2018-2019] EMBL-European Bioinformatics Institute
#
# Copyright [2018-2020] EMBL-European Bioinformatics Institute
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
#
# http://www.apache.org/licenses/LICENSE-2.0
#
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
......
#!/bin/bash
# Copyright [2018-2019] EMBL-European Bioinformatics Institute
#
# Copyright [2018-2020] EMBL-European Bioinformatics Institute
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
#
# http://www.apache.org/licenses/LICENSE-2.0
#
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
......
#! /bin/sh
# Copyright [2018-2019] EMBL-European Bioinformatics Institute
# Copyright [2018-2020] EMBL-European Bioinformatics Institute
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
......
# Copyright [2020] EMBL-European Bioinformatics Institute
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
# called from tail of "scripts/client/otter -S"
# to make subshell with environment
......
83
99
# This is the version of EnsEMBL that the Otter client uses. The
# install script uses this to check out the correct branch from the
......
83
99
# This is the version of EnsEMBL that the Otter server uses.
109
110
# This is the Otter major version. Together with the
# version_minor configuration parameter it determines the installation
......
#!/usr/bin/env perl
# Copyright [2018-2019] EMBL-European Bioinformatics Institute
#
# Copyright [2018-2020] EMBL-European Bioinformatics Institute
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
#
# http://www.apache.org/licenses/LICENSE-2.0
#
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
......
=head1 LICENSE
Copyright [2018-2019] EMBL-European Bioinformatics Institute
Copyright [2018-2020] EMBL-European Bioinformatics Institute
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
......
=head1 LICENSE
Copyright [2018-2019] EMBL-European Bioinformatics Institute
Copyright [2018-2020] EMBL-European Bioinformatics Institute
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
......
=head1 LICENSE
Copyright [2018-2019] EMBL-European Bioinformatics Institute
Copyright [2018-2020] EMBL-European Bioinformatics Institute
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
......
=head1 LICENSE
Copyright [2018-2019] EMBL-European Bioinformatics Institute
Copyright [2018-2020] EMBL-European Bioinformatics Institute
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
......
=head1 LICENSE
Copyright [2018-2019] EMBL-European Bioinformatics Institute
Copyright [2018-2020] EMBL-European Bioinformatics Institute
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
......
=head1 LICENSE
Copyright [2018-2019] EMBL-European Bioinformatics Institute
Copyright [2018-2020] EMBL-European Bioinformatics Institute
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
......
=head1 LICENSE
Copyright [2018-2019] EMBL-European Bioinformatics Institute
Copyright [2018-2020] EMBL-European Bioinformatics Institute
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
......
=head1 LICENSE
Copyright [2018-2019] EMBL-European Bioinformatics Institute
Copyright [2018-2020] EMBL-European Bioinformatics Institute
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
......
=head1 LICENSE
Copyright [2018-2019] EMBL-European Bioinformatics Institute
Copyright [2018-2020] EMBL-European Bioinformatics Institute
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
......
=head1 LICENSE
Copyright [2018-2019] EMBL-European Bioinformatics Institute
Copyright [2018-2020] EMBL-European Bioinformatics Institute
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
......
=head1 LICENSE
Copyright [2018-2019] EMBL-European Bioinformatics Institute
Copyright [2018-2020] EMBL-European Bioinformatics Institute
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
......
=head1 LICENSE
Copyright [2018-2019] EMBL-European Bioinformatics Institute
Copyright [2018-2020] EMBL-European Bioinformatics Institute
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
......
=head1 LICENSE
Copyright [2018-2019] EMBL-European Bioinformatics Institute
Copyright [2018-2020] EMBL-European Bioinformatics Institute
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
......
=head1 LICENSE
Copyright [2018-2019] EMBL-European Bioinformatics Institute
Copyright [2018-2020] EMBL-European Bioinformatics Institute
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
......
=head1 LICENSE
Copyright [2018-2019] EMBL-European Bioinformatics Institute
Copyright [2018-2020] EMBL-European Bioinformatics Institute
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
......
=head1 LICENSE
Copyright [2018-2019] EMBL-European Bioinformatics Institute
Copyright [2018-2020] EMBL-European Bioinformatics Institute
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
......
=head1 LICENSE
Copyright [2018-2019] EMBL-European Bioinformatics Institute
Copyright [2018-2020] EMBL-European Bioinformatics Institute
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
......