Merge branch 'master' into Bugfix/Perfomance_otf

data/assembly.sql

--- Copyright [2018] EMBL-European Bioinformatics Institute
+-- Copyright [2018-2019] EMBL-European Bioinformatics Institute
 -- 
 -- Licensed under the Apache License, Version 2.0 (the "License");
 -- you may not use this file except in compliance with the License.

data/tinyassembly.sql

--- Copyright [2018] EMBL-European Bioinformatics Institute
+-- Copyright [2018-2019] EMBL-European Bioinformatics Institute
 -- 
 -- Licensed under the Apache License, Version 2.0 (the "License");
 -- you may not use this file except in compliance with the License.

dev/otter_live_bash

 #! /bin/sh
-# Copyright [2018] EMBL-European Bioinformatics Institute
+# Copyright [2018-2019] EMBL-European Bioinformatics Institute
 # 
 # Licensed under the Apache License, Version 2.0 (the "License");
 # you may not use this file except in compliance with the License.

dev/otter_this

 #!/bin/bash
-# Copyright [2018] EMBL-European Bioinformatics Institute
+# Copyright [2018-2019] EMBL-European Bioinformatics Institute
 # 
 # Licensed under the Apache License, Version 2.0 (the "License");
 # you may not use this file except in compliance with the License.

dev/sandbox_shove

 #! /bin/sh
-# Copyright [2018] EMBL-European Bioinformatics Institute
+# Copyright [2018-2019] EMBL-European Bioinformatics Institute
 # 
 # Licensed under the Apache License, Version 2.0 (the "License");
 # you may not use this file except in compliance with the License.

docs/xml_description_tables

 #!/usr/bin/env perl
-# Copyright [2018] EMBL-European Bioinformatics Institute
+# Copyright [2018-2019] EMBL-European Bioinformatics Institute
 # 
 # Licensed under the Apache License, Version 2.0 (the "License");
 # you may not use this file except in compliance with the License.

modules/BaseWindow.pm

 =head1 LICENSE
 
-Copyright [2018] EMBL-European Bioinformatics Institute
+Copyright [2018-2019] EMBL-European Bioinformatics Institute
 
 Licensed under the Apache License, Version 2.0 (the "License");
 you may not use this file except in compliance with the License.

modules/Bio/Otter/Auth/Access.pm

 =head1 LICENSE
 
-Copyright [2018] EMBL-European Bioinformatics Institute
+Copyright [2018-2019] EMBL-European Bioinformatics Institute
 
 Licensed under the Apache License, Version 2.0 (the "License");
 you may not use this file except in compliance with the License.

modules/Bio/Otter/Auth/DsList.pm

 =head1 LICENSE
 
-Copyright [2018] EMBL-European Bioinformatics Institute
+Copyright [2018-2019] EMBL-European Bioinformatics Institute
 
 Licensed under the Apache License, Version 2.0 (the "License");
 you may not use this file except in compliance with the License.

modules/Bio/Otter/Auth/SSO.pm

 =head1 LICENSE
 
-Copyright [2018] EMBL-European Bioinformatics Institute
+Copyright [2018-2019] EMBL-European Bioinformatics Institute
 
 Licensed under the Apache License, Version 2.0 (the "License");
 you may not use this file except in compliance with the License.

modules/Bio/Otter/Auth/User.pm

 =head1 LICENSE
 
-Copyright [2018] EMBL-European Bioinformatics Institute
+Copyright [2018-2019] EMBL-European Bioinformatics Institute
 
 Licensed under the Apache License, Version 2.0 (the "License");
 you may not use this file except in compliance with the License.

modules/Bio/Otter/Auth/UserGroup.pm

 =head1 LICENSE
 
-Copyright [2018] EMBL-European Bioinformatics Institute
+Copyright [2018-2019] EMBL-European Bioinformatics Institute
 
 Licensed under the Apache License, Version 2.0 (the "License");
 you may not use this file except in compliance with the License.

modules/Bio/Otter/Debug.pm

 =head1 LICENSE
 
-Copyright [2018] EMBL-European Bioinformatics Institute
+Copyright [2018-2019] EMBL-European Bioinformatics Institute
 
 Licensed under the Apache License, Version 2.0 (the "License");
 you may not use this file except in compliance with the License.

modules/Bio/Otter/Error.pm

 =head1 LICENSE
 
-Copyright [2018] EMBL-European Bioinformatics Institute
+Copyright [2018-2019] EMBL-European Bioinformatics Institute
 
 Licensed under the Apache License, Version 2.0 (the "License");
 you may not use this file except in compliance with the License.

modules/Bio/Otter/Fetch/BAM.pm

 =head1 LICENSE
 
-Copyright [2018] EMBL-European Bioinformatics Institute
+Copyright [2018-2019] EMBL-European Bioinformatics Institute
 
 Licensed under the Apache License, Version 2.0 (the "License");
 you may not use this file except in compliance with the License.

modules/Bio/Otter/Fetch/BigWig.pm

 =head1 LICENSE
 
-Copyright [2018] EMBL-European Bioinformatics Institute
+Copyright [2018-2019] EMBL-European Bioinformatics Institute
 
 Licensed under the Apache License, Version 2.0 (the "License");
 you may not use this file except in compliance with the License.
@@ -25,7 +25,6 @@ use strict;
 use warnings;
 use Try::Tiny;
 use Carp;
-use Data::Dumper;
 use Bio::DB::BigWig qw( binMean );
 
 use Bio::Otter::Fetch::BigWig::Feature;
@@ -111,4 +110,3 @@ __END__
 =head1 AUTHOR
 
 Ana Code B<email> anacode@sanger.ac.uk
-

modules/Bio/Otter/Fetch/BigWig/Feature.pm

 =head1 LICENSE
 
-Copyright [2018] EMBL-European Bioinformatics Institute
+Copyright [2018-2019] EMBL-European Bioinformatics Institute
 
 Licensed under the Apache License, Version 2.0 (the "License");
 you may not use this file except in compliance with the License.

modules/Bio/Otter/Fetch/GFF.pm

 =head1 LICENSE
 
-Copyright [2018] EMBL-European Bioinformatics Institute
+Copyright [2018-2019] EMBL-European Bioinformatics Institute
 
 Licensed under the Apache License, Version 2.0 (the "License");
 you may not use this file except in compliance with the License.

modules/Bio/Otter/Fetch/GFF/Feature.pm

 =head1 LICENSE
 
-Copyright [2018] EMBL-European Bioinformatics Institute
+Copyright [2018-2019] EMBL-European Bioinformatics Institute
 
 Licensed under the Apache License, Version 2.0 (the "License");
 you may not use this file except in compliance with the License.

modules/Bio/Otter/GappedAlignment.pm

 =head1 LICENSE
 
-Copyright [2018] EMBL-European Bioinformatics Institute
+Copyright [2018-2019] EMBL-European Bioinformatics Institute
 
 Licensed under the Apache License, Version 2.0 (the "License");
 you may not use this file except in compliance with the License.