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Trim exon bug fix

This reverts commit 69e53ef1.

This reverts commit 5c5fb588, reversing
changes made to cf73ad05.

This reverts commit 94a3e545.

Feb deploy

This reverts commit 490d4f3e.

Yearly copyright update

Remove debug msgs

Yearly copyright update

Revert "Merge pull request #132 from thibauthourlier/hotfix/primary_assemblies"

Apply this revert to fix the failing build

This reverts commit aaa2ce3d, reversing
changes made to 54ae21f9.

Hotfix/primary assemblies

Add missing set_hstart_hend function

I'm not sure this modification is really needed. It definitely works
and it makes the code cleaner

Some species don't have contigs so it's better to use seqlevel
as it will return either contig or primary_assembly depending
on the database

Species without contigs need the INSDC synonym to be present to return
the correct data for the XML file
Use INSDC instead of insdc as sqlite is case sensitive

If we use the locus cache to fetch the new locus before it was
added to the cache we will modify the old one and ZMap will
not be able to delete the correct object in the display

Added herring species details

Changed authentication process to use prod authentication server

Do not check pipeline table if primary_assembly

Module to fetch data from a compara database

Added herring and herring test species

Temporary changes to the authentication process. Merging it as it does not affect anything serious.