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Fix for HDF5 issue

* Add MANE support

* Add assembly specifier to documentation

update endpoint docs - e98

correction for allowed region size

Add missing YAML CPAN dependency

Changes needed to support the use of release branches in Travis builds

This reverts commit 6628675b.

Release 98 updates

Update Beacon endpoint 

It's faster and a better maintained module.
It's also already in use in this project.

Travis: explicitly use Ubuntu Trusty for builds

Has no effect in case of 'master' but some of the more funky branch
names might need quoting, and it is simpler to have the quotes in here
already than to require the release procedure to demand adding them upon
branching. Besides, this is the best practice.

I can only assume this having been left at master when $ENSEMBL_BRANCH
got introduced was a mistake, ensembl-hdf5 does get branched every
release.

Source: release/98 branch of all relevant Ensembl repositories, pulled a
few minutes ago.

Matthieu Muffato's experiments with ensembl-hive have shown that in
spite of https://docs.travis-ci.com/user/languages/perl/ claiming
Travis supporting perl-5.8 and newer, the oldest version supported under
the Xenial environment is 5.22. This has since been confirmed by a post
on Travis community forums:
https://travis-ci.community/t/failure-with-perl-5-16-5-18-5-20/2458 .

We are presently not ready to drop support for Perl versions older than
what Travis makes available under Xenial, therefore let us for the time
being make sure we continue to use Trusty for now.

Documentation add optional field in variant_recoder/ 

Travis: Add mysql to the list of services [master]

update overlap.t

As required here https://github.com/Ensembl/ensembl-rest/blame/release/97/lib/EnsEMBL/REST/Model/Documentation.pm#L33

Ubuntu Xenial, which is now being rolled out as the default Linux distro
for Travis builds following the end of life of Ubuntu Trusty, does not
start services such as MySQL unless told to. We use the default distro
in our builds so we are likely to be affected.

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