meta.txt 5.26 KB
Newer Older
1
1	\N	schema_version	98
2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91
2	1	assembly.default	NCBI34
3	1	species.taxonomy_id	9606
26	1	species.classification	Homo sapiens
27	1	species.classification	Hominidae
28	1	species.classification	Catarrhini
29	1	species.classification	Primates
30	1	species.classification	Eutheria
31	1	species.classification	Mammalia
32	1	species.classification	Vertebrata
33	1	species.classification	Chordata
34	1	species.classification	Metazoa
35	1	species.classification	Eukaryota
36	1	species.common_name	Human
55	1	assembly.mapping	chromosome:NCBI33|contig
56	1	assembly.mapping	clone|contig
57	1	assembly.mapping	supercontig|contig
58	1	assembly.mapping	chromosome:NCBI33|contig|clone
59	1	assembly.mapping	chromosome:NCBI33|contig|supercontig
60	1	assembly.mapping	supercontig|contig|clone
64	1	assembly.mapping	chromosome:NCBI33#chunk
65	1	assembly.mapping	alt_chrom#chromosome:NCBI33
66	1	assembly.mapping	alt_chrom|chromosome:NCBI33|contig
67	1	species.production_name	homo_sapiens
70	1	species.scientific_name	Homo sapiens
71	\N	patch	patch_68_69_a.sql|schema_version
72	\N	patch	patch_69_70_a.sql|schema_version
73	\N	patch	patch_69_70_b.sql|add_mapping_set_history
74	\N	patch	patch_69_70_c.sql|column_datatype_consistency
75	\N	patch	patch_69_70_d.sql|data_file_id_auto_increment
76	\N	patch	patch_69_70_e.sql|protein_feature_hit_description
77	\N	schema_type	core
78	\N	patch	patch_70_71_a.sql|schema_version
79	\N	patch	patch_70_71_b.sql|mapping_set_index
80	\N	patch	patch_71_72_a.sql|schema_version
81	\N	patch	patch_71_72_b.sql|associated_xref
82	\N	patch	patch_72_73_a.sql|schema_version
83	\N	patch	patch_72_73_b.sql|alt_allele_type
84	\N	patch	patch_72_73_c.sql|add_object_type_marker
85	\N	patch	patch_73_74_b.sql|remove_dnac
88	\N	patch	patch_73_74_a.sql|schema_version
89	\N	patch	patch_73_74_c.sql|remove_unconventional_transcript_association
90	\N	patch	patch_73_74_d.sql|remove_qtl
97	\N	patch	patch_73_74_e.sql|remove_canonical_annotation
98	\N	patch	patch_73_74_f.sql|remove_pair_dna_align
99	\N	patch	patch_73_74_g.sql|add_transcript_idx_tise
100	\N	patch	patch_73_74_h.sql|alt_allele_unique_gene_idx
101	\N	patch	patch_74_75_a.sql|schema_version
102	\N	patch	patch_74_75_b.sql|transcript_source
103	\N	patch	patch_74_75_c.sql|add_genome_statistics
104	\N	patch	patch_74_75_d.sql|default_transcript_source
105	\N	patch	patch_74_75_e.sql|unique_attrib_key
106	\N	patch	patch_74_75_f.sql|longer_code
114	\N	patch	patch_75_76_a.sql|schema_version
115	\N	patch	patch_75_76_b.sql|allow_null_karyotype
116	\N	patch	patch_75_76_c.sql|remove_alternative_splicing
117	\N	patch	patch_76_77_a.sql|schema_version
118	\N	patch	patch_77_78_a.sql|schema_version
119	\N	patch	patch_77_78_b.sql|source_column_increase
120	\N	patch	patch_77_78_c.sql|Change unmapped_reason_id from smallint to int
121	\N	patch	patch_78_79_a.sql|schema_version
122	\N	patch	patch_78_79_b.sql|bamcov support
123	\N	patch	patch_79_80_a.sql|schema_version
124	\N	patch	patch_79_80_b.sql|xref_dbprimary_acc_longer
125	\N	patch	patch_79_80_c.sql|seq_region_synonym_longer
126	\N	patch	patch_79_80_d.sql|genome_statistics_value_longer
127	\N	patch	patch_80_81_a.sql|schema_version
128	\N	patch	patch_81_82_a.sql|schema_version
129	\N	patch	patch_81_82_b.sql|xref_width
130	\N	patch	patch_81_82_c.sql|seq_synonym_key
131	\N	patch	patch_82_83_a.sql|schema_version
132	\N	patch	patch_83_84_a.sql|schema_version
133	\N	patch	patch_83_84_b.sql|xref.version_default
134	\N	patch	patch_83_84_c.sql|protein_feature_unique
135	\N	patch	patch_83_84_d.sql|longer_synonym
136	\N	patch	patch_83_84_e.sql|nullable_versions
137	\N	patch	patch_84_85_a.sql|schema_version
138	\N	patch	patch_84_85_b.sql|remove_duplicated_key
146	\N	patch	patch_85_86_a.sql|schema_version
147	\N	patch	patch_85_86_b.sql|add dna_align_feature_attrib table
148	\N	patch	patch_85_86_c.sql|meta_case_insensitive
149	\N	patch	patch_86_87_a.sql|schema_version
150	\N	patch	patch_86_87_b.sql|meta_value_NOT_NULL
151	\N	patch	patch_86_87_c.sql|datetime_default_NULL
152	\N	patch	patch_87_88_a.sql|schema_version
153	\N	patch	patch_87_88_b.sql|seq_region_name_255
154	\N	patch	patch_87_88_c.sql|protein_featue_uniqueness
155	\N	patch	patch_88_89_a.sql|schema_version
156	\N	patch	patch_89_90_a.sql|schema_version
157	\N	patch	patch_89_90_b.sql|remove_status
158	\N	patch	patch_89_90_c.sql|pf_hit_name_case_sensitive
92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112
159	\N	patch	patch_90_91_a.sql|schema_version
160	\N	patch	patch_90_91_b.sql|align_type
161	\N	patch	patch_90_91_c.sql|protein_align_type
162	\N	patch	patch_90_91_d.sql|remove_external_data
163	\N	patch	patch_91_92_a.sql|schema_version
164	\N	patch	patch_91_92_b.sql|add_cigar_line_align_type
165	\N	patch	patch_92_93_a.sql|schema_version
166	\N	patch	patch_92_93_b.sql|biotype_table
167	\N	patch	patch_92_93_c.sql|collate_index_interpro
168	\N	patch	patch_93_94_a.sql|schema_version
169	\N	patch	patch_93_94_b.sql|nullable_ox_analysis
170	\N	patch	patch_93_94_c.sql|default_aln_type
171	\N	patch	patch_94_95_a.sql|schema_version
172	\N	patch	patch_94_95_b.sql|vertebrate_division_rename
173	\N	patch	patch_95_96_a.sql|schema_version
174	\N	patch	patch_96_97_a.sql|schema_version
175	\N	patch	patch_96_97_b.sql|biotype_so_term
176	\N	patch	patch_96_97_c.sql|rnaproduct_tables
177	\N	patch	patch_96_97_d.sql|add_object_type_rnaproduct
178	\N	patch	patch_96_97_e.sql|add_stable_id_event_type_rnaproduct
179	\N	patch	patch_97_98_a.sql|schema_version