Commit 766b727c authored by Marek Szuba's avatar Marek Szuba

Patch test databases

Source: master branches of all relevant Ensembl repositories as of 10:00
today. This brings all test databases at hand to schema version 100.
parent a9f245b6
......@@ -108,4 +108,4 @@
4000 MEDLINE 1 KNOWN 5 MEDLINE LIT \N \N \N
4100 UniGene 1 KNOWN 5 UniGene MISC \N \N \N
4200 RFAM 1 XREF 5 RFAM MISC \N \N \N
11000 UCSC \N KNOWNXREF 100 UCSC Stable ID MISC \N \N \N
11000 UCSC KNOWNXREF 100 UCSC Stable ID MISC \N \N \N
......@@ -113,3 +113,4 @@
180 \N patch patch_97_98_a.sql|schema_version
188 \N patch patch_98_99_a.sql|schema_version
189 \N patch patch_99_100_a.sql|schema_version
190 \N patch patch_99_100_b.sql|alter_externaldb_type_notnull
......@@ -284,7 +284,7 @@ CREATE TABLE `external_db` (
`status` enum('KNOWNXREF','KNOWN','XREF','PRED','ORTH','PSEUDO') COLLATE latin1_bin NOT NULL DEFAULT 'KNOWNXREF',
`priority` int(11) NOT NULL DEFAULT 0,
`db_display_name` varchar(255) COLLATE latin1_bin DEFAULT NULL,
`type` enum('ARRAY','ALT_TRANS','ALT_GENE','MISC','LIT','PRIMARY_DB_SYNONYM','ENSEMBL') COLLATE latin1_bin DEFAULT NULL,
`type` enum('ARRAY','ALT_TRANS','ALT_GENE','MISC','LIT','PRIMARY_DB_SYNONYM','ENSEMBL') COLLATE latin1_bin NOT NULL,
`secondary_db_name` varchar(255) COLLATE latin1_bin DEFAULT NULL,
`secondary_db_table` varchar(255) COLLATE latin1_bin DEFAULT NULL,
`description` text COLLATE latin1_bin DEFAULT NULL,
......@@ -490,7 +490,7 @@ CREATE TABLE `meta` (
PRIMARY KEY (`meta_id`),
UNIQUE KEY `species_key_value_idx` (`species_id`,`meta_key`,`meta_value`),
KEY `species_value_idx` (`species_id`,`meta_value`)
) ENGINE=MyISAM AUTO_INCREMENT=190 DEFAULT CHARSET=latin1;
) ENGINE=MyISAM AUTO_INCREMENT=191 DEFAULT CHARSET=latin1;
CREATE TABLE `meta_coord` (
`table_name` varchar(40) COLLATE latin1_bin NOT NULL DEFAULT '',
......
65 \N schema_version 99
69 \N schema_version 100
2 \N schema_type compara
3 \N patch patch_84_85_a.sql|schema_version
4 \N patch patch_84_85_b.sql|gene_tree_root_attr
......@@ -54,3 +54,4 @@
66 \N patch patch_97_98_a.sql|schema_version
67 \N patch patch_97_98_b.sql|division_name
68 \N patch patch_98_99_a.sql|schema_version
70 \N patch patch_99_100_a.sql|schema_version
......@@ -428,7 +428,7 @@ CREATE TABLE `meta` (
PRIMARY KEY (`meta_id`),
UNIQUE KEY `species_key_value_idx` (`species_id`,`meta_key`,`meta_value`(255)),
KEY `species_value_idx` (`species_id`,`meta_value`(255))
) ENGINE=MyISAM AUTO_INCREMENT=69 DEFAULT CHARSET=latin1;
) ENGINE=MyISAM AUTO_INCREMENT=71 DEFAULT CHARSET=latin1;
CREATE TABLE `method_link` (
`method_link_id` int(10) unsigned NOT NULL AUTO_INCREMENT,
......
......@@ -191,3 +191,4 @@
1703 \N patch patch_97_98_a.sql|schema_version
1704 \N patch patch_98_99_a.sql|schema_version
1705 \N patch patch_99_100_a.sql|schema_version
1706 \N patch patch_99_100_b.sql|alter_externaldb_type_notnull
......@@ -284,7 +284,7 @@ CREATE TABLE `external_db` (
`status` enum('KNOWNXREF','KNOWN','XREF','PRED','ORTH','PSEUDO') COLLATE latin1_bin NOT NULL DEFAULT 'KNOWNXREF',
`priority` int(11) NOT NULL DEFAULT 0,
`db_display_name` varchar(255) COLLATE latin1_bin DEFAULT NULL,
`type` enum('ARRAY','ALT_TRANS','ALT_GENE','MISC','LIT','PRIMARY_DB_SYNONYM','ENSEMBL') COLLATE latin1_bin DEFAULT NULL,
`type` enum('ARRAY','ALT_TRANS','ALT_GENE','MISC','LIT','PRIMARY_DB_SYNONYM','ENSEMBL') COLLATE latin1_bin NOT NULL,
`secondary_db_name` varchar(255) COLLATE latin1_bin DEFAULT NULL,
`secondary_db_table` varchar(255) COLLATE latin1_bin DEFAULT NULL,
`description` text COLLATE latin1_bin DEFAULT NULL,
......@@ -490,7 +490,7 @@ CREATE TABLE `meta` (
PRIMARY KEY (`meta_id`),
UNIQUE KEY `species_key_value_idx` (`species_id`,`meta_key`,`meta_value`),
KEY `species_value_idx` (`species_id`,`meta_value`)
) ENGINE=MyISAM AUTO_INCREMENT=1706 DEFAULT CHARSET=latin1;
) ENGINE=MyISAM AUTO_INCREMENT=1707 DEFAULT CHARSET=latin1;
CREATE TABLE `meta_coord` (
`table_name` varchar(40) COLLATE latin1_bin NOT NULL DEFAULT '',
......
Markdown is supported
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment