Unverified Commit 86df9d80 authored by sgiorgetti's avatar sgiorgetti Committed by GitHub
Browse files

Merge pull request #64 from Ensembl/task/test-db-patches

Patching test databases for 107
parents 34f6b74b 23f654d3
Pipeline #248924 failed with stage
in 60 minutes and 23 seconds
1 \N schema_version 106
1 \N schema_version 107
2 1 assembly.default NCBI34
3 1 species.taxonomy_id 9606
26 1 species.classification Homo sapiens
......@@ -121,3 +121,5 @@
195 \N patch patch_103_104_a.sql|schema_version
196 \N patch patch_104_105_a.sql|schema_version
197 \N patch patch_105_106_a.sql|schema_version
198 \N patch patch_106_107_a.sql|schema_version
199 \N patch patch_106_107_b.sql|Added index for seq_region_mapping
......@@ -490,7 +490,7 @@ CREATE TABLE `meta` (
PRIMARY KEY (`meta_id`),
UNIQUE KEY `species_key_value_idx` (`species_id`,`meta_key`,`meta_value`),
KEY `species_value_idx` (`species_id`,`meta_value`)
) ENGINE=MyISAM AUTO_INCREMENT=198 DEFAULT CHARSET=latin1;
) ENGINE=MyISAM AUTO_INCREMENT=200 DEFAULT CHARSET=latin1;
CREATE TABLE `meta_coord` (
`table_name` varchar(40) COLLATE latin1_bin NOT NULL DEFAULT '',
......@@ -776,6 +776,7 @@ CREATE TABLE `seq_region_mapping` (
`external_seq_region_id` int(10) unsigned NOT NULL,
`internal_seq_region_id` int(10) unsigned NOT NULL,
`mapping_set_id` int(10) unsigned NOT NULL,
UNIQUE KEY `seq_region_mapping_uindex` (`external_seq_region_id`,`internal_seq_region_id`,`mapping_set_id`),
KEY `mapping_set_idx` (`mapping_set_id`)
) ENGINE=MyISAM DEFAULT CHARSET=latin1;
......
92 \N schema_version 106
95 \N schema_version 107
2 \N schema_type compara
3 \N patch patch_84_85_a.sql|schema_version
4 \N patch patch_84_85_b.sql|gene_tree_root_attr
......@@ -72,3 +72,5 @@
90 \N patch patch_104_105_a.sql|schema_version
91 \N patch patch_104_105_b.sql|genebuild_varchar255
93 \N patch patch_105_106_a.sql|schema_version
94 \N patch patch_105_106_b.sql|clusterset_id_varchar50
96 \N patch patch_106_107_a.sql|schema_version
......@@ -230,7 +230,7 @@ CREATE TABLE `gene_tree_root` (
`root_id` int(10) unsigned NOT NULL,
`member_type` enum('protein','ncrna') NOT NULL,
`tree_type` enum('clusterset','supertree','tree') NOT NULL,
`clusterset_id` varchar(20) NOT NULL DEFAULT 'default',
`clusterset_id` varchar(50) NOT NULL DEFAULT 'default',
`method_link_species_set_id` int(10) unsigned NOT NULL,
`species_tree_root_id` bigint(20) unsigned DEFAULT NULL,
`gene_align_id` int(10) unsigned DEFAULT NULL,
......@@ -436,7 +436,7 @@ CREATE TABLE `meta` (
PRIMARY KEY (`meta_id`),
UNIQUE KEY `species_key_value_idx` (`species_id`,`meta_key`,`meta_value`(255)),
KEY `species_value_idx` (`species_id`,`meta_value`(255))
) ENGINE=MyISAM AUTO_INCREMENT=94 DEFAULT CHARSET=latin1;
) ENGINE=MyISAM AUTO_INCREMENT=97 DEFAULT CHARSET=latin1;
CREATE TABLE `method_link` (
`method_link_id` int(10) unsigned NOT NULL AUTO_INCREMENT,
......
1 \N schema_type core
2 \N schema_version 106
2 \N schema_version 107
3 \N patch patch_65_66_a.sql|schema_version
4 \N patch patch_65_66_b.sql|fix_external_db_id
5 \N patch patch_65_66_c.sql|reorder_unmapped_obj_index
......@@ -199,3 +199,5 @@
1711 \N patch patch_103_104_a.sql|schema_version
1712 \N patch patch_104_105_a.sql|schema_version
1713 \N patch patch_105_106_a.sql|schema_version
1714 \N patch patch_106_107_a.sql|schema_version
1715 \N patch patch_106_107_b.sql|Added index for seq_region_mapping
......@@ -490,7 +490,7 @@ CREATE TABLE `meta` (
PRIMARY KEY (`meta_id`),
UNIQUE KEY `species_key_value_idx` (`species_id`,`meta_key`,`meta_value`),
KEY `species_value_idx` (`species_id`,`meta_value`)
) ENGINE=MyISAM AUTO_INCREMENT=1714 DEFAULT CHARSET=latin1;
) ENGINE=MyISAM AUTO_INCREMENT=1716 DEFAULT CHARSET=latin1;
CREATE TABLE `meta_coord` (
`table_name` varchar(40) COLLATE latin1_bin NOT NULL DEFAULT '',
......@@ -776,6 +776,7 @@ CREATE TABLE `seq_region_mapping` (
`external_seq_region_id` int(10) unsigned NOT NULL,
`internal_seq_region_id` int(10) unsigned NOT NULL,
`mapping_set_id` int(10) unsigned NOT NULL,
UNIQUE KEY `seq_region_mapping_uindex` (`external_seq_region_id`,`internal_seq_region_id`,`mapping_set_id`),
KEY `mapping_set_idx` (`mapping_set_id`)
) ENGINE=MyISAM DEFAULT CHARSET=latin1;
......
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