Merge pull request #58 from Ensembl/Bugfix/CompressedDb

Fix db load

modules/Bio/EnsEMBL/Test/MultiTestDB/mysql.pm

@@ -43,12 +43,11 @@ use base 'Bio::EnsEMBL::Test::MultiTestDB';
 sub load_txt_dump {
     my ($self, $txt_file, $tablename, $db) = @_;
     if(index($txt_file, 'compressed_genotype_var') != -1) {
-    	my $load = sprintf(q{LOAD DATA LOCAL INFILE '%s' INTO TABLE `%s`FIELDS ESCAPED BY '\\\\' 
-    	 SET genotypes = UNHEX(@var1)}, $txt_file, $tablename);	
+      my $load = sprintf(q{LOAD DATA LOCAL INFILE '%s' INTO TABLE `%s`FIELDS ESCAPED BY '\\\\' (variation_id, subsnp_id , @var1) SET genotypes = UNHEX(@var1)}, $txt_file, $tablename);
     	$db->do($load);
     	return $db;
     } elsif (index($txt_file, 'compressed_genotype_region') != -1) {
-    	my $load = sprintf(q{LOAD DATA LOCAL INFILE '%s' INTO TABLE `%s`FIELDS ESCAPED BY '\\\\' (sample_id, seq_region_id, seq_region_start, seq_region_end, seq_region_strand, @var1) SET genotypes = UNHEX(@var1)}, $txt_file, $tablename);	
+      my $load = sprintf(q{LOAD DATA LOCAL INFILE '%s' INTO TABLE `%s`FIELDS ESCAPED BY '\\\\' (sample_id, seq_region_id, seq_region_start, seq_region_end, seq_region_strand, @var1) SET genotypes = UNHEX(@var1)}, $txt_file, $tablename);
     	$db->do($load);
     	return $db;
     } else {
@@ -56,7 +55,7 @@ sub load_txt_dump {
     	$db->do($load);
     	return $db;
     }
-    
+
 }
 
 sub create_and_use_db {