meta.txt 8.24 KB
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1	\N	schema_type	core
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2	\N	schema_version	95
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3	\N	patch	patch_65_66_a.sql|schema_version
4	\N	patch	patch_65_66_b.sql|fix_external_db_id
5	\N	patch	patch_65_66_c.sql|reorder_unmapped_obj_index
6	1	assembly.coverage_depth	high
7	1	assembly.date	2012-01
8	1	assembly.default	GRCm38
9	1	assembly.name	GRCm38.p4
10	1	genebuild.id	42
11	1	genebuild.start_date	2012-01-Ensembl
12	1	repeat.analysis	repeatmask
13	1	repeat.analysis	dust
14	1	repeat.analysis	trf
15	1	assembly.accession	GCA_000001635.6
1624	1	species.taxonomy_id	10090
1625	1	species.common_name	house mouse
48	1	assembly.mapping	scaffold:GRCm38#contig
49	1	assembly.mapping	chromosome:GRCm38|scaffold:GRCm38
50	1	assembly.mapping	chromosome:GRCm38#contig
1623	1	species.stable_id_prefix	ENSMUS
1656	1	species.production_name	mus_musculus
1655	1	species.scientific_name	Mus musculus
428	1	assembly.mapping	chromosome:GRCm38#chromosome:NCBIM37
429	1	assembly.mapping	scaffold:GRCm38#supercontig:NCBIM37
430	1	assembly.mapping	chromosome:NCBIM37#supercontig:NCBIM37
431	1	assembly.mapping	chromosome:GRCm38#chromosome:NCBIM36
432	1	liftover.mapping	chromosome:GRCm38#chromosome:NCBIM37
433	1	liftover.mapping	chromosome:GRCm38#chromosome:NCBIM36
1617	1	species.alias	mus_musculus
435	1	genebuild.havana_datafreeze_date	09-06-2015
437	1	genebuild.initial_release_date	2012-07
438	1	genebuild.last_geneset_update	2015-09
439	1	genebuild.method	full_genebuild
1601	1	genebuild.level	toplevel
1602	1	transcriptbuild.level	toplevel
1603	1	exonbuild.level	toplevel
1604	1	repeat_featurebuild.level	toplevel
1605	1	dna_align_featurebuild.level	toplevel
1606	1	protein_align_featurebuild.level	toplevel
1607	1	prediction_transcriptbuild.level	toplevel
1608	1	prediction_exonbuild.level	toplevel
449	\N	patch	patch_66_67_c.sql|adding_intron_supporting_evidence
450	\N	patch	patch_66_67_a.sql|schema_version
451	\N	patch	patch_66_67_b.sql|drop_stable_id_views
452	\N	patch	patch_66_67_d.sql|adding_gene_transcript_annotated
453	\N	patch	patch_66_67_e.sql|index_canonical_transcript_id
454	\N	patch	patch_65_66_d.sql|add_index_to_ontology_xref_table
455	\N	patch	patch_65_66_e.sql|fix_external_db_id_in_xref
456	\N	patch	patch_65_66_f.sql|drop_default_values
457	\N	patch	patch_67_68_a.sql|schema_version
1626	1	species.display_name	Mouse
1657	1	species.url	Mus_musculus
503	1	assembly.web_accession_type	GenBank Assembly ID
504	1	assembly.web_accession_source	NCBI
505	\N	patch	patch_67_68_b.sql|xref_uniqueness
1659	1	xref.timestamp	2015-08-10 21:46:18
507	\N	patch	patch_67_68_c.sql|altering_intron_supporting_evidence
508	\N	patch	patch_67_68_d.sql|add_is_splice_canonical_and_seq_index
556	1	removed_evidence_flag.ensembl_dbversion	homo_sapiens_core_82_38
557	\N	patch	patch_67_68_e.sql|fix_67_68_e_xref_index
558	1	removed_evidence_flag.uniprot_dbversion	uniprot_2015_08
559	\N	patch	patch_68_69_a.sql|schema_version
1633	1	species.classification	Glires
744	1	assembly.long_name	Genome Reference Consortium Mouse Reference 38
677	\N	patch	patch_69_70_a.sql|schema_version
678	\N	patch	patch_69_70_b.sql|add_mapping_set_history
679	\N	patch	patch_69_70_c.sql|column_datatype_consistency
680	\N	patch	patch_69_70_d.sql|data_file_id_auto_increment
681	\N	patch	patch_69_70_e.sql|protein_feature_hit_description
745	\N	patch	patch_70_71_a.sql|schema_version
746	\N	patch	patch_70_71_b.sql|mapping_set_index
1627	1	species.classification	Mus musculus
812	\N	patch	patch_71_72_a.sql|schema_version
813	\N	patch	patch_71_72_b.sql|associated_xref
868	\N	patch	patch_72_73_a.sql|schema_version
1619	1	species.alias	mus musculus
914	\N	patch	patch_72_73_b.sql|alt_allele_type
915	\N	patch	patch_72_73_c.sql|add_object_type_marker
981	\N	patch	patch_73_74_a.sql|schema_version
982	\N	patch	patch_73_74_b.sql|remove_dnac
983	\N	patch	patch_73_74_c.sql|remove_unconventional_transcript_association
984	\N	patch	patch_73_74_d.sql|remove_qtl
985	\N	patch	patch_73_74_e.sql|remove_canonical_annotation
986	\N	patch	patch_73_74_f.sql|remove_pair_dna_align
987	\N	patch	patch_73_74_g.sql|add_transcript_idx_tise
1124	\N	patch	patch_73_74_h.sql|alt_allele_unique_gene_idx
1125	\N	patch	patch_74_75_a.sql|schema_version
1126	\N	patch	patch_74_75_b.sql|transcript_source
1127	\N	patch	patch_74_75_c.sql|add_genome_statistics
1173	\N	patch	patch_74_75_d.sql|default_transcript_source
1174	\N	patch	patch_74_75_e.sql|unique_attrib_key
1175	1	gencode.version	GENCODE M7
1176	\N	patch	patch_74_75_f.sql|longer_code
1196	\N	patch	patch_75_76_a.sql|schema_version
1197	\N	patch	patch_75_76_b.sql|allow_null_karyotype
1198	\N	patch	patch_75_76_c.sql|remove_alternative_splicing
1612	1	species.alias	mmus
1642	1	species.classification	Sarcopterygii
1258	\N	patch	patch_76_77_a.sql|schema_version
1643	1	species.classification	Euteleostomi
1644	1	species.classification	Teleostomi
1634	1	species.classification	Euarchontoglires
1342	\N	patch	patch_77_78_a.sql|schema_version
1343	\N	patch	patch_77_78_b.sql|source_column_increase
1628	1	species.classification	Murinae
1629	1	species.classification	Muridae
1390	1	assembly.ucsc_alias	mm10
1393	\N	patch	patch_77_78_c.sql|Change unmapped_reason_id from smallint to int
1394	\N	patch	patch_78_79_a.sql|schema_version
1613	1	species.alias	10090
1636	1	species.classification	Eutheria
1637	1	species.classification	Theria
1638	1	species.classification	Mammalia
1441	\N	patch	patch_78_79_b.sql|bamcov support
1458	\N	patch	patch_79_80_a.sql|schema_version
1459	\N	patch	patch_79_80_b.sql|xref_dbprimary_acc_longer
1460	\N	patch	patch_79_80_c.sql|seq_region_synonym_longer
1614	1	species.alias	mus
1615	1	species.alias	m_musculus
1640	1	species.classification	Tetrapoda
1641	1	species.classification	Dipnotetrapodomorpha
1630	1	species.classification	Muroidea
1631	1	species.classification	Sciurognathi
1632	1	species.classification	Rodentia
1507	\N	patch	patch_79_80_d.sql|genome_statistics_value_longer
1542	\N	patch	patch_80_81_a.sql|schema_version
1618	1	species.alias	musmus
1616	1	species.alias	mmusculus
1646	1	species.classification	Vertebrata
1647	1	species.classification	Craniata
1645	1	species.classification	Gnathostomata
1639	1	species.classification	Amniota
1635	1	species.classification	Boreoeutheria
1609	\N	patch	patch_81_82_a.sql|schema_version
1610	\N	patch	patch_81_82_b.sql|xref_width
1611	\N	patch	patch_81_82_c.sql|seq_synonym_key
1620	1	species.alias	ensmm
1621	1	species.alias	mouse
1622	1	species.alias	house mouse
1648	1	species.classification	Chordata
1649	1	species.classification	Deuterostomia
1650	1	species.classification	Bilateria
1651	1	species.classification	Eumetazoa
1652	1	species.classification	Metazoa
1653	1	species.classification	Opisthokonta
1654	1	species.classification	Eukaryota
1660	1	species.division	Ensembl
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1661	\N	patch	patch_82_83_a.sql|schema_version
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1662	\N	patch	patch_83_84_a.sql|schema_version
1663	\N	patch	patch_83_84_b.sql|xref.version_default
1664	\N	patch	patch_83_84_c.sql|protein_feature_unique
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1665	\N	patch	patch_83_84_d.sql|longer_synonym
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1666	\N	patch	patch_83_84_e.sql|nullable_versions
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1667	\N	patch	patch_84_85_a.sql|schema_version
1668	\N	patch	patch_84_85_b.sql|remove_duplicated_key
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1669	\N	patch	patch_85_86_a.sql|schema_version
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1670	\N	patch	patch_85_86_b.sql|add dna_align_feature_attrib table
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1671	\N	patch	patch_85_86_c.sql|meta_case_insensitive
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1672	\N	patch	patch_86_87_a.sql|schema_version
1673	\N	patch	patch_86_87_b.sql|meta_value_NOT_NULL
1674	\N	patch	patch_86_87_c.sql|datetime_default_NULL
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1675	\N	patch	patch_87_88_a.sql|schema_version
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1676	\N	patch	patch_87_88_b.sql|seq_region_name_255
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1677	\N	patch	patch_87_88_c.sql|protein_featue_uniqueness
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1678	\N	patch	patch_88_89_a.sql|schema_version
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1679	\N	patch	patch_89_90_a.sql|schema_version
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1680	\N	patch	patch_89_90_b.sql|remove_status
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1681	\N	patch	patch_89_90_c.sql|pf_hit_name_case_sensitive
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1682	\N	patch	patch_90_91_a.sql|schema_version
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1683	\N	patch	patch_90_91_b.sql|align_type
1684	\N	patch	patch_90_91_c.sql|protein_align_type
1685	\N	patch	patch_90_91_d.sql|remove_external_data
174 175
1686	\N	patch	patch_91_92_a.sql|schema_version
1687	\N	patch	patch_91_92_b.sql|add_cigar_line_align_type
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1688	\N	patch	patch_92_93_a.sql|schema_version
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1689	\N	patch	patch_92_93_b.sql|biotype_table
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1690	\N	patch	patch_92_93_c.sql|collate_index_interpro
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1691	\N	patch	patch_93_94_a.sql|schema_version
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1692	\N	patch	patch_93_94_b.sql|nullable_ox_analysis
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1693	\N	patch	patch_93_94_c.sql|default_aln_type
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1694	\N	patch	patch_94_95_a.sql|schema_version