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Michele Clamp authored
tests will not work as I havent' changed the dumps yet. Changed the way genscans are stored and retrieved Clone - removed Feature_Obj and Gene_Obj use statements Exon - inherits from Bio::EnsEMBL::SeqFeature to use the extra gubbins - added temporary_id as for Transcript and Gene SeqFeature - debug Transcript - debug Translation - added temporary_id ContigI - removed string checking - takes *far too long for big contigs FeatureAdaptor - debug on inserts RawContig - removed Feature_Obj and Gene_Obj use statements - changed to AnalysisAdaptor and FeatureAdaptor - changed analysis to analysisprocess in several methods - removed Feature_Obj - changed to AnalysisAdaptor - changed the way genscans are fetched. Utils - added fset2transcript_3frame method StaticContig - changed analysis to analysisprocess - gets analysis by AnalysisAdaptor and not Feature_Obj - gets genscans differently
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