Commit 01e547a2 authored by Magali Ruffier's avatar Magali Ruffier
Browse files

do not ignore Uniprot_genename entries

parent 198f76d8
......@@ -46,22 +46,6 @@ SELECT object_xref_id
WHERE ox_status = 'DUMP_OUT' AND label REGEXP '^LOC[[:digit:]]+'
LOCP
$ignore{'Uniprot_genename'} =<<IEG;
SELECT DISTINCT ox.object_xref_id
FROM object_xref ox, dependent_xref dx,
xref xmas, xref xdep,
source smas, source sdep
WHERE ox.xref_id = dx.dependent_xref_id AND
dx.dependent_xref_id = xdep.xref_id AND
dx.master_xref_id = xmas.xref_id AND
xmas.source_id = smas.source_id AND
xdep.source_id = sdep.source_id AND
smas.name like "Uniprot/SPTREMBL" AND
smas.status = "LOWEVIDENCE" AND
sdep.name like "Uniprot_genename" AND
ox.ox_status = "DUMP_OUT"
IEG
return [\@list,\%ignore];
}
......
......@@ -43,22 +43,6 @@ SELECT object_xref_id
WHERE ox_status = 'DUMP_OUT' AND label REGEXP '^LOC[[:digit:]]+'
LOCP
$ignore{'Uniprot_genename'} =<<IEG;
SELECT DISTINCT ox.object_xref_id
FROM object_xref ox, dependent_xref dx,
xref xmas, xref xdep,
source smas, source sdep
WHERE ox.xref_id = dx.dependent_xref_id AND
dx.dependent_xref_id = xdep.xref_id AND
dx.master_xref_id = xmas.xref_id AND
xmas.source_id = smas.source_id AND
xdep.source_id = sdep.source_id AND
smas.name like "Uniprot/SPTREMBL" AND
smas.status = "LOWEVIDENCE" AND
sdep.name like "Uniprot_genename" AND
ox.ox_status = "DUMP_OUT"
IEG
return [\@list,\%ignore];
}
......
......@@ -44,23 +44,6 @@ SELECT object_xref_id
WHERE ox_status = 'DUMP_OUT' AND label REGEXP '^LOC[[:digit:]]+'
LOCP
$ignore{'Uniprot_genename'} =<<IEG;
SELECT DISTINCT ox.object_xref_id
FROM object_xref ox, dependent_xref dx,
xref xmas, xref xdep,
source smas, source sdep
WHERE ox.xref_id = dx.dependent_xref_id AND
dx.dependent_xref_id = xdep.xref_id AND
dx.master_xref_id = xmas.xref_id AND
xmas.source_id = smas.source_id AND
xdep.source_id = sdep.source_id AND
smas.name like "Uniprot/SPTREMBL" AND
smas.status = "LOWEVIDENCE" AND
sdep.name like "Uniprot_genename" AND
ox.ox_status = "DUMP_OUT"
IEG
return [\@list,\%ignore];
}
......
......@@ -64,22 +64,6 @@ SELECT object_xref_id
WHERE ox_status = 'DUMP_OUT' AND label REGEXP '^LOC[[:digit:]]+'
LOCP
$ignore{'Uniprot_genename'} =<<IEG;
SELECT DISTINCT ox.object_xref_id
FROM object_xref ox, dependent_xref dx,
xref xmas, xref xdep,
source smas, source sdep
WHERE ox.xref_id = dx.dependent_xref_id AND
dx.dependent_xref_id = xdep.xref_id AND
dx.master_xref_id = xmas.xref_id AND
xmas.source_id = smas.source_id AND
xdep.source_id = sdep.source_id AND
smas.name like "Uniprot/SPTREMBL" AND
smas.status = "LOWEVIDENCE" AND
sdep.name like "Uniprot_genename" AND
ox.ox_status = "DUMP_OUT"
IEG
return [\@list,\%ignore];
......
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