From 024d79f64cc139d02143b054f6e563264dcad0e1 Mon Sep 17 00:00:00 2001
From: Andrew Yates <ayates@ebi.ac.uk>
Date: Thu, 8 Nov 2012 14:22:15 +0000
Subject: [PATCH] Adding processed_pseudogene to our groups
---
modules/Bio/EnsEMBL/Utils/BiotypeMapper.pm | 3 ++-
1 file changed, 2 insertions(+), 1 deletion(-)
diff --git a/modules/Bio/EnsEMBL/Utils/BiotypeMapper.pm b/modules/Bio/EnsEMBL/Utils/BiotypeMapper.pm
index 1b9b9c7db9..14e4ea4c5a 100644
--- a/modules/Bio/EnsEMBL/Utils/BiotypeMapper.pm
+++ b/modules/Bio/EnsEMBL/Utils/BiotypeMapper.pm
@@ -131,6 +131,7 @@ my %grouping_of_biotypes = (
'pseudogene' => [qw( pseudogene retrotransposed snRNA_pseudogene tRNA_pseudogene
miRNA_pseudogene Mt_tRNA_pseudogene rRNA_pseudogene
scRNA_pseudogene misc_RNA_pseudogene snoRNA_pseudogene
+ processed_pseudogene
)],
'long_noncoding' => [qw( 3prime_overlapping_ncrna antisense lincRNA ncrna_host non_coding
processed_transcript sense_intronic sense_overlapping
@@ -144,7 +145,7 @@ my %grouping_of_biotypes = (
retrotransposed IG_V_pseudogene TR_V_pseudogene
IG_J_pseudogene IG_C_pseudogene processed_transcript
antisense ambiguous_orf transcribed_processed_pseudogene
- disrupted_domain
+ disrupted_domain processed_pseudogene
)],
'peptide_producing' => [qw( protein_coding polymorphic_pseudogene IG_V_gene TR_V_gene
IG_J_gene TR_J_gene IG_D_gene IG_C_gene TR_C_gene
--
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