From 042d3fd4ef3abb85a5dc8a5c4a6f88c0f785016b Mon Sep 17 00:00:00 2001
From: Monika Komorowska <mk8@sanger.ac.uk>
Date: Mon, 9 Jan 2012 15:45:32 +0000
Subject: [PATCH] added biotype column to transcript_stable_id
---
misc-scripts/xref_mapping/sql/table.sql | 5 +++--
1 file changed, 3 insertions(+), 2 deletions(-)
diff --git a/misc-scripts/xref_mapping/sql/table.sql b/misc-scripts/xref_mapping/sql/table.sql
index b58d2e3c32..2044b254c3 100755
--- a/misc-scripts/xref_mapping/sql/table.sql
+++ b/misc-scripts/xref_mapping/sql/table.sql
@@ -284,9 +284,9 @@ CREATE TABLE havana_status (
CREATE TABLE process_status (
id INT(10) UNSIGNED NOT NULL AUTO_INCREMENT,
status enum('xref_created','parsing_started','parsing_finished','alt_alleles_added',
- 'xref_fasta_dumped','core_fasta_dumped',
+ 'xref_fasta_dumped','core_fasta_dumped','core_data_loaded',
'mapping_submitted','mapping_finished','mapping_processed',
- 'core_data_loaded','direct_xrefs_parsed',
+ 'direct_xrefs_parsed',
'prioritys_flagged','processed_pairs','biomart_test_finished',
'source_level_move_finished','alt_alleles_processed',
'official_naming_done',
@@ -336,6 +336,7 @@ CREATE TABLE transcript_stable_id (
internal_id INT UNSIGNED NOT NULL,
stable_id VARCHAR(128) NOT NULL,
display_xref_id INT UNSIGNED DEFAULT NULL,
+ biotype VARCHAR(40) NOT NULL,
PRIMARY KEY (stable_id),
INDEX internal_idx (internal_id)
--
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