diff --git a/modules/Bio/EnsEMBL/Pipeline/FASTA/EmailSummary.pm b/modules/Bio/EnsEMBL/Pipeline/FASTA/EmailSummary.pm index 920226216a7a18ac18bf6e57a1600ac01c2053c5..d23a9ad3258665cab7273300b74921a20cc33b23 100644 --- a/modules/Bio/EnsEMBL/Pipeline/FASTA/EmailSummary.pm +++ b/modules/Bio/EnsEMBL/Pipeline/FASTA/EmailSummary.pm @@ -14,7 +14,7 @@ sub fetch_input { my $blast_gene = $self->jobs('BlastGeneIndex'); my $blast_pep = $self->jobs('BlastPepIndex'); my $blat = $self->jobs('BlatDNAIndex', 100); -# my $blat_sm = $self->jobs('BlatSmDNAIndex', 100); + my $blat_sm = $self->jobs('BlatSmDNAIndex', 100); my @args = ( $dump_dna->{successful_jobs}, @@ -31,8 +31,8 @@ sub fetch_input { $blast_pep->{failed_jobs}, $blat->{successful_jobs}, $blat->{failed_jobs}, -# $blat_sm->{successful_jobs}, -# $blat_sm->{failed_jobs}, + $blat_sm->{successful_jobs}, + $blat_sm->{failed_jobs}, $self->failed(), $self->summary($dump_dna), $self->summary($copy_dna), @@ -41,7 +41,7 @@ sub fetch_input { $self->summary($blast_gene), $self->summary($blast_pep), $self->summary($blat), -# $self->summary($blat_sm), + $self->summary($blat_sm), ); my $msg = sprintf(<<'MSG', @args); @@ -54,7 +54,7 @@ Your FASTA Pipeline has finished. We have: * %d species with BLAST GENE indexes generated (%d failed) * %d species with BLAST PEPTIDE indexes generated (%d failed) * %d species with BLAT DNA generated (%d failed) - * d species with BLAT SM DNA generated (d failed) + * %d species with BLAT SM DNA generated (d failed) %s @@ -76,7 +76,7 @@ Full breakdown follows ... %s -s +%s MSG $self->param('text', $msg); @@ -126,7 +126,7 @@ sub failed { return 'No jobs failed. Congratulations!'; } my $output = <<'MSG'; -The following jobs have failed during this run. Please check: +The following jobs have failed during this run. Please check your hive's error msg table for the following jobs: MSG foreach my $job (@{$failed}) {