Patch test databases

Source: release/98 branch of ols-ensembl-loader and master branches
of all other relevant Ensembl repositories, pulled a few minutes ago.
Compara, Variation and ontology schemas all have already been bumped to
version 98.

modules/t/test-genome-DBs/circ/core/SQLite/table.sql

 -- 
 -- Created by SQL::Translator::Producer::SQLite
--- Created on Tue Apr  2 16:03:53 2019
+-- Created on Mon Jun 17 16:51:33 2019
 -- 
 
 BEGIN TRANSACTION;

modules/t/test-genome-DBs/circ/core/meta.txt

@@ -39,7 +39,7 @@
 95	\N	patch	patch_83_84_c.sql|protein_feature_unique
 96	\N	patch	patch_83_84_d.sql|longer_synonym
 1	\N	schema_type	core
-2	\N	schema_version	97
+2	\N	schema_version	98
 8	1	assembly.accession	GCA_000292705.1
 10	1	assembly.date	2012-08
 7	1	assembly.default	GCA_000292705.1
@@ -131,3 +131,4 @@
 131	\N	patch	patch_96_97_c.sql|rnaproduct_tables
 132	\N	patch	patch_96_97_d.sql|add_object_type_rnaproduct
 133	\N	patch	patch_96_97_e.sql|add_stable_id_event_type_rnaproduct
+134	\N	patch	patch_97_98_a.sql|schema_version

modules/t/test-genome-DBs/circ/core/table.sql

@@ -490,7 +490,7 @@ CREATE TABLE `meta` (
   PRIMARY KEY (`meta_id`),
   UNIQUE KEY `species_key_value_idx` (`species_id`,`meta_key`,`meta_value`),
   KEY `species_value_idx` (`species_id`,`meta_value`)
-) ENGINE=MyISAM AUTO_INCREMENT=134 DEFAULT CHARSET=latin1;
+) ENGINE=MyISAM AUTO_INCREMENT=135 DEFAULT CHARSET=latin1;
 
 CREATE TABLE `meta_coord` (
   `table_name` varchar(40) COLLATE latin1_bin NOT NULL DEFAULT '',

modules/t/test-genome-DBs/homo_sapiens/core/SQLite/table.sql

 -- 
 -- Created by SQL::Translator::Producer::SQLite
--- Created on Tue Apr  2 16:03:56 2019
+-- Created on Mon Jun 17 16:51:37 2019
 -- 
 
 BEGIN TRANSACTION;

modules/t/test-genome-DBs/homo_sapiens/core/meta.txt

-1	\N	schema_version	97
+1	\N	schema_version	98
 2	1	assembly.default	NCBI34
 3	1	species.taxonomy_id	9606
 26	1	species.classification	Homo sapiens
@@ -110,3 +110,4 @@
 177	\N	patch	patch_96_97_c.sql|rnaproduct_tables
 178	\N	patch	patch_96_97_d.sql|add_object_type_rnaproduct
 179	\N	patch	patch_96_97_e.sql|add_stable_id_event_type_rnaproduct
+180	\N	patch	patch_97_98_a.sql|schema_version

modules/t/test-genome-DBs/homo_sapiens/empty/SQLite/table.sql

 -- 
 -- Created by SQL::Translator::Producer::SQLite
--- Created on Tue Apr  2 16:03:59 2019
+-- Created on Mon Jun 17 16:51:40 2019
 -- 
 
 BEGIN TRANSACTION;

modules/t/test-genome-DBs/homo_sapiens/empty/meta.txt

-1	\N	schema_version	97
+1	\N	schema_version	98
 2	1	assembly.default	NCBI34
 33	1	species.classification	Chordata
 32	1	species.classification	Vertebrata
@@ -110,3 +110,4 @@
 159	\N	patch	patch_96_97_c.sql|rnaproduct_tables
 160	\N	patch	patch_96_97_d.sql|add_object_type_rnaproduct
 161	\N	patch	patch_96_97_e.sql|add_stable_id_event_type_rnaproduct
+162	\N	patch	patch_97_98_a.sql|schema_version

modules/t/test-genome-DBs/homo_sapiens/empty/table.sql

@@ -490,7 +490,7 @@ CREATE TABLE `meta` (
   PRIMARY KEY (`meta_id`),
   UNIQUE KEY `species_key_value_idx` (`species_id`,`meta_key`,`meta_value`),
   KEY `species_value_idx` (`species_id`,`meta_value`)
-) ENGINE=MyISAM AUTO_INCREMENT=162 DEFAULT CHARSET=latin1;
+) ENGINE=MyISAM AUTO_INCREMENT=163 DEFAULT CHARSET=latin1;
 
 CREATE TABLE `meta_coord` (
   `table_name` varchar(40) COLLATE latin1_bin NOT NULL DEFAULT '',

modules/t/test-genome-DBs/homo_sapiens/patch/SQLite/table.sql

 -- 
 -- Created by SQL::Translator::Producer::SQLite
--- Created on Tue Apr  2 16:04:02 2019
+-- Created on Mon Jun 17 16:51:43 2019
 -- 
 
 BEGIN TRANSACTION;

modules/t/test-genome-DBs/homo_sapiens/patch/meta.txt

-1	\N	schema_version	97
+1	\N	schema_version	98
 2014	1	species.classification	Haplorrhini
 40	1	assembly.default	GRCh37
 41	1	assembly.date	2009-02
@@ -115,3 +115,4 @@
 2122	\N	patch	patch_96_97_c.sql|rnaproduct_tables
 2123	\N	patch	patch_96_97_d.sql|add_object_type_rnaproduct
 2124	\N	patch	patch_96_97_e.sql|add_stable_id_event_type_rnaproduct
+2125	\N	patch	patch_97_98_a.sql|schema_version

modules/t/test-genome-DBs/homo_sapiens/patch/table.sql

@@ -490,7 +490,7 @@ CREATE TABLE `meta` (
   PRIMARY KEY (`meta_id`),
   UNIQUE KEY `species_key_value_idx` (`species_id`,`meta_key`,`meta_value`),
   KEY `species_value_idx` (`species_id`,`meta_value`)
-) ENGINE=MyISAM AUTO_INCREMENT=2125 DEFAULT CHARSET=latin1;
+) ENGINE=MyISAM AUTO_INCREMENT=2126 DEFAULT CHARSET=latin1;
 
 CREATE TABLE `meta_coord` (
   `table_name` varchar(40) COLLATE latin1_bin NOT NULL DEFAULT '',

modules/t/test-genome-DBs/homo_sapiens/variation/meta.txt

 1	\N	schema_type	variation
-2	\N	schema_version	97
+2	\N	schema_version	98
 3	\N	patch	patch_84_85_a.sql|schema version
 4	\N	patch	patch_84_85_b.sql|create sample_synonym
 5	\N	patch	patch_84_85_c.sql|drop column moltype from variation_synonym
@@ -42,3 +42,4 @@
 42	\N	patch	patch_96_97_a.sql|schema version
 43	\N	patch	patch_96_97_b.sql|move ancestral allele column to variation_feature
 44	\N	patch	patch_96_97_c.sql|add an unique index on the name column
+45	\N	patch	patch_97_98_a.sql|schema version

modules/t/test-genome-DBs/homo_sapiens/variation/table.sql

@@ -186,7 +186,7 @@ CREATE TABLE `meta` (
   PRIMARY KEY (`meta_id`),
   UNIQUE KEY `species_key_value_idx` (`species_id`,`meta_key`,`meta_value`),
   KEY `species_value_idx` (`species_id`,`meta_value`)
-) ENGINE=MyISAM AUTO_INCREMENT=45 DEFAULT CHARSET=latin1;
+) ENGINE=MyISAM AUTO_INCREMENT=46 DEFAULT CHARSET=latin1;
 
 CREATE TABLE `meta_coord` (
   `table_name` varchar(40) NOT NULL,

modules/t/test-genome-DBs/homo_sapiens/xref/SQLite/table.sql

 -- 
 -- Created by SQL::Translator::Producer::SQLite
--- Created on Tue Apr  2 16:04:03 2019
+-- Created on Mon Jun 17 16:51:44 2019
 -- 
 
 BEGIN TRANSACTION;

modules/t/test-genome-DBs/mapping/core/SQLite/table.sql

 -- 
 -- Created by SQL::Translator::Producer::SQLite
--- Created on Tue Apr  2 16:04:05 2019
+-- Created on Mon Jun 17 16:51:47 2019
 -- 
 
 BEGIN TRANSACTION;

modules/t/test-genome-DBs/mapping/core/meta.txt

-1	\N	schema_version	97
+1	\N	schema_version	98
 2	1	assembly.default	MULTIMAP
 3	1	species.taxonomy_id	1
 4	1	assembly.mapping	chromosome:MULTIMAP#contig
@@ -71,3 +71,4 @@
 164	\N	patch	patch_96_97_c.sql|rnaproduct_tables
 165	\N	patch	patch_96_97_d.sql|add_object_type_rnaproduct
 166	\N	patch	patch_96_97_e.sql|add_stable_id_event_type_rnaproduct
+167	\N	patch	patch_97_98_a.sql|schema_version

modules/t/test-genome-DBs/mapping/core/table.sql

@@ -490,7 +490,7 @@ CREATE TABLE `meta` (
   PRIMARY KEY (`meta_id`),
   UNIQUE KEY `species_key_value_idx` (`species_id`,`meta_key`,`meta_value`),
   KEY `species_value_idx` (`species_id`,`meta_value`)
-) ENGINE=MyISAM AUTO_INCREMENT=167 DEFAULT CHARSET=latin1;
+) ENGINE=MyISAM AUTO_INCREMENT=168 DEFAULT CHARSET=latin1;
 
 CREATE TABLE `meta_coord` (
   `table_name` varchar(40) COLLATE latin1_bin NOT NULL DEFAULT '',

modules/t/test-genome-DBs/multi/compara/SQLite/table.sql

 -- 
 -- Created by SQL::Translator::Producer::SQLite
--- Created on Tue Apr  2 16:04:07 2019
+-- Created on Mon Jun 17 16:51:50 2019
 -- 
 
 BEGIN TRANSACTION;
@@ -292,8 +292,7 @@ CREATE TABLE "gene_tree_root_attr" (
   "lca_node_id" integer,
   "taxonomic_coverage" float,
   "ratio_species_genes" float,
-  "model_name" varchar(40),
-  "division" varchar(10)
+  "model_name" varchar(40)
 );
 
 --

modules/t/test-genome-DBs/multi/compara/meta.txt

@@ -51,3 +51,4 @@
 61	\N	patch	patch_94_95_d.sql|node_type_within_species_speciation
 62	\N	patch	patch_95_96_a.sql|schema_version
 64	\N	patch	patch_96_97_a.sql|schema_version
+65	\N	patch	patch_97_98_b.sql|division_name