diff --git a/misc-scripts/assembly_patches/run_patch_mapping.pl b/misc-scripts/assembly_patches/run_patch_mapping.pl
index 4f39e695e19d16cd52002b4f0b33d61a9d1f4ef9..9236bdaa766717ee01114e6dbfeb0d2a30f55e1e 100755
--- a/misc-scripts/assembly_patches/run_patch_mapping.pl
+++ b/misc-scripts/assembly_patches/run_patch_mapping.pl
@@ -18,7 +18,7 @@ my $user         = '';
 my $pass         = '';
 my $port         = '';
 my $dbname       = '';
-my @patch_types = ('PATCH_FIX','PATCH_NOVEL');
+my @patch_types = ('PATCH_FIX','PATCH_NOVEL','HAP');
 my $align_by_component;
 my $align_non_ident;
 my $fix_overlap;