From 0ac45b005f1f6d910edf5529a8c050c148cdcf0a Mon Sep 17 00:00:00 2001
From: Glenn Proctor <gp1@sanger.ac.uk>
Date: Thu, 1 Nov 2007 11:20:57 +0000
Subject: [PATCH] Updated for release 48.
---
.../xref_projection/submit_projections.pl | 17 ++++++++++-------
1 file changed, 10 insertions(+), 7 deletions(-)
diff --git a/misc-scripts/xref_projection/submit_projections.pl b/misc-scripts/xref_projection/submit_projections.pl
index 90b2f780b4..70674bbad1 100644
--- a/misc-scripts/xref_projection/submit_projections.pl
+++ b/misc-scripts/xref_projection/submit_projections.pl
@@ -4,11 +4,11 @@ use strict;
# Remember to check/set the various config optons
# ------------------------------ config -------------------------------
-my $release = 47;
+my $release = 48;
my $base_dir = "/lustre/work1/ensembl/gp1/projections/";
-my $conf = "release_47.ini"; # registry config file, specifies Compara location
+my $conf = "release_48.ini"; # registry config file, specifies Compara location
# location of other databases
my $host = "ens-staging";
@@ -32,7 +32,10 @@ if (! -e $dir) {
}
# common options
-my $opts = "-conf $conf -host $host -user $user -port $port -pass $pass -version $release -release $release -quiet -nobackup";
+my $script_opts = "-conf $conf -host $host -user $user -port $port -pass $pass -version $release -release $release -quiet -nobackup";
+
+#my $bsub_opts = "-R'select[myens-staging<200]'";
+my $bsub_opts = "";
my @names_1_1 = (["human", "chimp" ],
["human", "opossum" ],
@@ -128,7 +131,7 @@ foreach my $pair (@names_1_1) {
$e = "$dir/names_${from}_$to.err";
$n = substr("n_${from}_$to", 0, 10); # job name display limited to 10 chars
print "Submitting name projection from $from to $to\n";
- system "bsub -o $o -e $e -J $n perl project_display_xrefs.pl $opts -from $from -to $to -names -delete_names -no_database";
+ system "bsub $bsub_opts -o $o -e $e -J $n perl project_display_xrefs.pl $script_opts -from $from -to $to -names -delete_names -no_database";
}
# 1:many
@@ -138,13 +141,13 @@ foreach my $pair (@names_1_many) {
$e = "$dir/names_${from}_$to.err";
$n = substr("n_${from}_$to", 0, 10);
print "Submitting name projection from $from to $to (1:many)\n";
- system "bsub -o $o -e $e -J $n perl project_display_xrefs.pl $opts -from $from -to $to -names -delete_names -no_database -one_to_many";
+ system "bsub $bsub_opts -o $o -e $e -J $n perl project_display_xrefs.pl $script_opts -from $from -to $to -names -delete_names -no_database -one_to_many";
}
# ----------------------------------------
# GO terms
-$opts .= " -nobackup";
+$script_opts .= " -nobackup";
foreach my $pair (@go_terms) {
($from, $to) = @$pair;
@@ -152,7 +155,7 @@ foreach my $pair (@go_terms) {
$e = "$dir/go_${from}_$to.err";
$n = substr("g_${from}_$to", 0, 10);
print "Submitting GO term projection from $from to $to\n";
- system "bsub -o $o -e $e -J $n perl project_display_xrefs.pl $opts -from $from -to $to -go_terms -delete_go_terms";
+ system "bsub $bsub_opts -o $o -e $e -J $n perl project_display_xrefs.pl $script_opts -from $from -to $to -go_terms -delete_go_terms";
}
# ----------------------------------------
--
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