From 0ac676fef4df43fcc4a63eb82f3328a08f95984a Mon Sep 17 00:00:00 2001
From: Glenn Proctor <gp1@sanger.ac.uk>
Date: Wed, 20 Jul 2005 12:29:02 +0000
Subject: [PATCH] Factor->motif
---
modules/t/regulatoryFactor.t | 6 +++---
modules/t/regulatoryFactorAdaptor.t | 16 ++++++++--------
2 files changed, 11 insertions(+), 11 deletions(-)
diff --git a/modules/t/regulatoryFactor.t b/modules/t/regulatoryFactor.t
index 360e474223..e36a8f6340 100644
--- a/modules/t/regulatoryFactor.t
+++ b/modules/t/regulatoryFactor.t
@@ -1,7 +1,7 @@
use strict;
use Bio::EnsEMBL::Test::TestUtils;
-use Bio::EnsEMBL::RegulatoryMotif;
+use Bio::EnsEMBL::RegulatoryFactor;
BEGIN { $| = 1;
use Test;
@@ -13,12 +13,12 @@ my $verbose = 0;
#
# Test constructor
#
-my $rm = Bio::EnsEMBL::RegulatoryMotif->new(-NAME => 'Joe',
+my $rm = Bio::EnsEMBL::RegulatoryFactor->new(-NAME => 'Joe',
-TYPE => 'promoter');
ok($rm);
ok(ref($rm));
-ok($rm->isa('Bio::EnsEMBL::RegulatoryMotif'));
+ok($rm->isa('Bio::EnsEMBL::RegulatoryFactor'));
ok($rm->name eq 'Joe');
ok($rm->type eq 'promoter');
diff --git a/modules/t/regulatoryFactorAdaptor.t b/modules/t/regulatoryFactorAdaptor.t
index d89c2e5011..9ae9cfaedc 100644
--- a/modules/t/regulatoryFactorAdaptor.t
+++ b/modules/t/regulatoryFactorAdaptor.t
@@ -16,24 +16,24 @@ my $verbose = 0;
# Test Creation
-my $rma = $db->get_RegulatoryMotifAdaptor();
+my $rma = $db->get_RegulatoryFactorAdaptor();
-ok(ref($rma) && $rma->isa('Bio::EnsEMBL::DBSQL::RegulatoryMotifAdaptor'));
+ok(ref($rma) && $rma->isa('Bio::EnsEMBL::DBSQL::RegulatoryFactorAdaptor'));
#
# Test fetch_by_dbID
#
my $rm = $rma->fetch_by_dbID(1);
-ok($rm->name() eq 'motif1');
+ok($rm->name() eq 'factor1');
ok($rm->dbID == 1);
ok($rm->type eq 'miRNA_target');
#
# Test fetch_by_name
#
-$rm = $rma->fetch_by_name('motif1');
-ok($rm->name() eq 'motif1');
+$rm = $rma->fetch_by_name('factor1');
+ok($rm->name() eq 'factor1');
ok($rm->dbID() == 1);
ok($rm->type() eq 'miRNA_target');
@@ -46,9 +46,9 @@ ok(@{$rma->fetch_all_by_type('promoter')} == 2);
# Test store
#
-$multi_db->save('core', 'regulatory_motif');
+$multi_db->save('core', 'regulatory_factor');
-$rm = Bio::EnsEMBL::RegulatoryMotif->new(-NAME => 'test_store',
+$rm = Bio::EnsEMBL::RegulatoryFactor->new(-NAME => 'test_store',
-TYPE => 'promoter');
$rma->store($rm);
@@ -60,4 +60,4 @@ $rm = $rma->fetch_by_dbID($rm->dbID);
ok($rm->name eq 'test_store');
ok($rm->type eq 'promoter');
-$multi_db->restore('core', 'regulatory_motif');
+$multi_db->restore('core', 'regulatory_factor');
--
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