From 0b16a1cd432913c838810bbd227cd5a49435ffe4 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Andreas=20Kusalananda=20K=C3=A4h=C3=A4ri?= <ak4@sanger.ac.uk> Date: Thu, 26 Sep 2013 12:59:42 +0000 Subject: [PATCH] Updated for farm3 (unit for bsub's -M switch was changed for new farm). --- misc-scripts/id_mapping/default.conf | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/misc-scripts/id_mapping/default.conf b/misc-scripts/id_mapping/default.conf index 4042dfcafc..9c5fbd146a 100644 --- a/misc-scripts/id_mapping/default.conf +++ b/misc-scripts/id_mapping/default.conf @@ -47,8 +47,8 @@ build_cache_concurrent_jobs = 25 ;; LSF parameters lsf_opt_run_small = "-q small" -lsf_opt_run = "-We 90 -M6000000 -R'select[linux && lustre && mem>6000] rusage[mem=6000]'" -lsf_opt_dump_cache = "-We 5 -M2000000 -R'select[linux && lustre && mem>2000] rusage[mem=2000]'" +lsf_opt_run = "-We 90 -M6000 -R'select[linux && lustre && mem>6000] rusage[mem=6000]'" +lsf_opt_dump_cache = "-We 5 -M2000 -R'select[linux && lustre && mem>2000] rusage[mem=2000]'" transcript_score_threshold = 0.25 gene_score_threshold = 0.125 @@ -60,10 +60,10 @@ exonerate_bytes_per_job = 250000 exonerate_concurrent_jobs = 200 exonerate_threshold = 0.5 exonerate_extra_params = '--bestn 100' -lsf_opt_exonerate = "-We 10 -M600000 -R'select[linux && lustre && mem>600] rusage[mem=600]'" +lsf_opt_exonerate = "-We 10 -M600 -R'select[linux && lustre && mem>600] rusage[mem=600]'" synteny_rescore_jobs = 20 -lsf_opt_synteny_rescore = "-We 10 -M5000000 -R'select[linux && lustre && mem>5000] rusage[mem=5000]'" +lsf_opt_synteny_rescore = "-We 10 -M5000 -R'select[linux && lustre && mem>5000] rusage[mem=5000]'" ;; StableIdMapper mapping_types = gene,transcript,translation,exon -- GitLab