From 0d96d99a40abe4a2d7ab9291528db4b220914848 Mon Sep 17 00:00:00 2001
From: Glenn Proctor <gp1@sanger.ac.uk>
Date: Thu, 24 Mar 2005 10:12:51 +0000
Subject: [PATCH] Added support for regulatory features.
---
sql/table.sql | 71 +++++++++++++++++++++++++++++++++++++++++++++++++++
1 file changed, 71 insertions(+)
diff --git a/sql/table.sql b/sql/table.sql
index 63b575cf05..c5b2cff7b2 100755
--- a/sql/table.sql
+++ b/sql/table.sql
@@ -1201,3 +1201,74 @@ CREATE TABLE density_type (
UNIQUE(analysis_id, block_size)
) TYPE=MyISAM;
+
+################################################################################
+#
+# Table structure for table 'regulatory_feature'
+#
+
+CREATE TABLE regulatory_feature (
+
+ regulatory_feature_id INT NOT NULL auto_increment,
+ name VARCHAR(255) NOT NULL,
+ seq_region_id INT NOT NULL, # FK refs seq_region
+ seq_region_start INT NOT NULL,
+ seq_region_end INT NOT NULL,
+ seq_region_strand TINYINT NOT NULL,
+ analysis_id INT NOT NULL, # FK refs analysis
+ regulatory_motif_id INT, # FK refs regulatory_motif
+ influence ENUM('positive', 'negative', 'mixed', 'unknown'),
+
+ PRIMARY KEY(regulatory_feature_id)
+
+) TYPE=MyISAM;
+
+################################################################################
+#
+# Table structure for table 'regulatory_motif'
+#
+
+CREATE TABLE regulatory_motif (
+
+ regulatory_motif_id INT NOT NULL auto_increment,
+ name VARCHAR(255) NOT NULL,
+ type ENUM('miRNA_target', 'promoter'),
+
+ PRIMARY KEY(regulatory_motif_id)
+
+) TYPE=MyISAM;
+
+################################################################################
+#
+# Table structure for table 'regulatory_feature_object'
+#
+# Relates regulatory regions to the Ensembl objects they influence. Many-many.
+
+CREATE TABLE regulatory_feature_object (
+
+ regulatory_feature_id INT NOT NULL, # FK to regulatory_feature
+ ensembl_object_type ENUM( 'Transcript', 'Translation', 'Gene') NOT NULL,
+ ensembl_object_id INT NOT NULL, # FK to transcript,gene etc
+
+ KEY regulatory_feature_idx (regulatory_feature_id),
+ KEY ensembl_object_idx (ensembl_object_type, ensembl_object_id)
+
+) TYPE=MyISAM;
+
+
+################################################################################
+#
+# Table structure for table 'peptide_regulatory_feature'
+#
+
+CREATE TABLE peptide_regulatory_feature (
+
+ translation_id INT NOT NULL, # FK to translation
+ regulatory_feature_id INT NOT NULL, # FK to regulatory_feature
+
+ KEY translation_idx (translation_id),
+ KEY regulatory_feature_idx (regulatory_feature_id)
+
+) TYPE=MyISAM;
+
+
--
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