From 0df8692ca247bf73dbf51cbf8d465cff9b277ef5 Mon Sep 17 00:00:00 2001
From: Thomas Maurel <maurel@ebi.ac.uk>
Date: Fri, 22 Jun 2012 09:08:38 +0000
Subject: [PATCH] Replaced "$option" from "-d" to "-pattern" for the percent_gc
script.
---
misc-scripts/density_feature/submit_density_features.pl | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/misc-scripts/density_feature/submit_density_features.pl b/misc-scripts/density_feature/submit_density_features.pl
index 6b75b905a1..2f23bdb6a9 100644
--- a/misc-scripts/density_feature/submit_density_features.pl
+++ b/misc-scripts/density_feature/submit_density_features.pl
@@ -357,7 +357,7 @@ $prod_dbh->disconnect;
$file_name_end = "_gc";
$script = "$SERVERROOT/percent_gc_calc.pl";
$script_title = "percent GC calculation";
- $option = " -d ";
+ $option = " -pattern ";
}
case 'repeat_coverage' {
$data_file = "$outdir/repeat_coverage_data.txt";
--
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