From 0ee04aa7210cc8360000325740e8d0f81039c555 Mon Sep 17 00:00:00 2001
From: Magali Ruffier <mr6@ebi.ac.uk>
Date: Thu, 1 Nov 2012 09:27:13 +0000
Subject: [PATCH] xrefs with display LOC or SSC are not used for gene display
assignement
---
misc-scripts/xref_mapping/XrefMapper/OfficialNaming.pm | 3 +++
1 file changed, 3 insertions(+)
diff --git a/misc-scripts/xref_mapping/XrefMapper/OfficialNaming.pm b/misc-scripts/xref_mapping/XrefMapper/OfficialNaming.pm
index e36eb5dda5..9ceaff4d10 100644
--- a/misc-scripts/xref_mapping/XrefMapper/OfficialNaming.pm
+++ b/misc-scripts/xref_mapping/XrefMapper/OfficialNaming.pm
@@ -1068,6 +1068,9 @@ sub find_from_other_sources{
$dbentrie_sth->execute($ext_db_name, $gene_id, "Gene");
$dbentrie_sth->bind_columns(\$display, \$xref_id, \$object_xref_id, \$level, \$desc);
while($dbentrie_sth->fetch){
+ if ($display =~ /^LOC/ || $display =~ /^SSC/) {
+ next;
+ }
$gene_symbol = $display;
$gene_symbol_xref_id = $xref_id;
$$tran_source = $ext_db_name;
--
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